Silver in PDB 7sdt: [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdt was solved by S.Vecchioni, B.Lu, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.11 / 4.00
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.881, 105.881, 94.823, 90, 90, 120
R / Rfree (%)	19.6 / 21.2

The structure of [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice also contains other interesting chemical elements:

Iodine

(I)

1 atom

The binding sites of Silver atom in the [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdt). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdt:

Silver binding site 1 out of 1 in the [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [Iu:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag101 b:162.6 occ:1.00 N3 B:IMC4 1.6 217.4 1.0 O4 A:5IU12 1.7 253.1 1.0 N3 A:5IU12 2.0 258.3 1.0 C4 A:5IU12 2.1 252.3 1.0 C4 B:IMC4 2.5 217.3 1.0 C2 B:IMC4 2.5 220.0 1.0 O4 B:IMC4 2.8 213.8 1.0 N2 B:IMC4 2.8 220.3 1.0 C2 A:5IU12 3.3 258.4 1.0 N1 B:DA5 3.4 222.9 1.0 N6 B:DA3 3.5 211.6 1.0 C5 A:5IU12 3.5 245.4 1.0 C6 B:DA3 3.7 214.8 1.0 N1 B:DA3 3.7 214.4 1.0 N1 B:IMC4 3.8 222.4 1.0 C6 B:DA5 3.8 225.2 1.0 C5 B:IMC4 3.8 220.6 1.0 O2 A:5IU12 3.8 265.6 1.0 N6 B:DA5 3.8 226.3 1.0 N3 A:DT11 3.9 253.8 1.0 O4 A:DT13 4.0 218.0 1.0 O4 A:DT11 4.0 256.8 1.0 C2 B:DA5 4.1 222.4 1.0 C4 A:DT11 4.1 252.4 1.0 N3 A:DT13 4.1 228.9 1.0 C4 A:DT13 4.2 219.6 1.0 C6 B:IMC4 4.3 223.3 1.0 N1 A:5IU12 4.3 250.3 1.0 C6 A:5IU12 4.4 244.0 1.0 C2 B:DA3 4.5 217.2 1.0 C5 B:DA3 4.5 217.8 1.0 C2 A:DT11 4.7 248.4 1.0 C5 B:DA5 4.7 226.7 1.0 I5 A:5IU12 4.8 236.7 1.0 C1' B:IMC4 4.9 226.0 1.0 C2 A:DT13 4.9 232.8 1.0 N3 B:DA5 5.0 223.1 1.0 O2 A:DT11 5.0 250.1 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.