Silver in PDB 7sdl: [S:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [S:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdl was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.80 / 4.37
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.917, 105.917, 93.855, 90, 90, 120
R / Rfree (%)	20 / 26.6

The binding sites of Silver atom in the [S:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdl). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [S:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdl:

Silver binding site 1 out of 1 in the [S:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [S:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag101 b:272.7 occ:1.00 N3 B:DT4 2.1 330.3 1.0 N3 A:IMC12 2.4 339.2 1.0 O4 A:IMC12 2.5 342.1 1.0 O2 B:DT4 2.8 329.7 1.0 C2 B:DT4 2.8 335.6 1.0 C4 A:IMC12 2.9 340.5 1.0 N1 B:DA5 2.9 326.0 1.0 C6 B:DA5 3.0 339.0 1.0 N6 B:DA3 3.0 317.7 1.0 N6 B:DA5 3.2 346.3 1.0 C4 B:DT4 3.2 331.6 1.0 C6 B:DA3 3.3 326.3 1.0 N1 B:DA3 3.4 330.0 1.0 O4 B:DT4 3.4 326.1 1.0 C2 B:DA5 3.5 316.5 1.0 O4 A:DT13 3.6 359.2 1.0 C2 A:IMC12 3.6 337.1 1.0 C5 B:DA5 3.7 340.4 1.0 N2 A:IMC12 4.0 335.3 1.0 N1 B:DT4 4.1 344.5 1.0 C5 B:DA3 4.1 333.6 1.0 C4 A:DT13 4.2 356.8 1.0 C4 B:DA5 4.2 327.6 1.0 N3 B:DA5 4.2 318.7 1.0 O4 A:DT11 4.3 362.8 1.0 C2 B:DA3 4.3 341.6 1.0 C5 A:IMC12 4.3 339.5 1.0 N3 A:DT11 4.4 360.3 1.0 C5 B:DT4 4.4 341.3 1.0 N3 A:DT13 4.5 354.1 1.0 N7 B:DA5 4.6 348.0 1.0 C4 A:DT11 4.6 361.4 1.0 C6 B:DT4 4.8 347.8 1.0 N1 A:IMC12 4.8 336.5 1.0 C4 B:DA3 4.9 346.3 1.0 N7 B:DA3 4.9 331.0 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.