Silver in PDB 7sdh: [S:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [S:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdh was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.79 / 4.05
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.857, 105.857, 93.859, 90, 90, 120
R / Rfree (%)	18.4 / 23.6

The binding sites of Silver atom in the [S:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdh). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [S:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdh:

Silver binding site 1 out of 1 in the [S:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [S:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag101 b:338.6 occ:1.00 N3 A:IMC12 1.7 394.5 1.0 N3 B:IMC4 1.8 339.6 1.0 O4 A:IMC12 2.2 404.3 1.0 C4 A:IMC12 2.2 391.3 1.0 C2 B:IMC4 2.4 342.6 1.0 N2 B:IMC4 2.4 342.3 1.0 N1 B:DA5 2.6 346.0 1.0 C6 B:DA5 2.8 350.7 1.0 C4 B:IMC4 2.9 338.3 1.0 C2 A:IMC12 2.9 377.6 1.0 C2 B:DA5 3.0 344.3 1.0 N1 B:DA3 3.1 345.6 1.0 N6 B:DA5 3.3 351.8 1.0 O4 B:IMC4 3.4 330.1 1.0 C5 B:DA5 3.4 352.0 1.0 C6 B:DA3 3.4 339.2 1.0 N3 A:DT13 3.4 381.7 1.0 N6 B:DA3 3.4 326.4 1.0 N2 A:IMC12 3.4 384.6 1.0 C5 A:IMC12 3.5 369.7 1.0 N3 B:DA5 3.6 346.1 1.0 C4 B:DA5 3.7 349.9 1.0 N1 B:IMC4 3.7 344.3 1.0 O4 A:DT13 3.8 371.9 1.0 C2 B:DA3 3.8 355.7 1.0 C4 A:DT13 3.8 367.4 1.0 N1 A:IMC12 4.0 352.6 1.0 C5 B:IMC4 4.1 342.0 1.0 C2 A:DT13 4.1 381.6 1.0 C6 A:IMC12 4.2 349.2 1.0 C5 B:DA3 4.3 345.4 1.0 N7 B:DA5 4.3 354.0 1.0 C6 B:IMC4 4.4 344.3 1.0 O2 A:DT13 4.4 394.1 1.0 N3 A:DT11 4.4 397.6 1.0 C5M A:IMC12 4.6 366.6 1.0 O4 A:DT11 4.6 418.6 1.0 N9 B:DA5 4.7 355.1 1.0 N3 B:DA3 4.7 361.1 1.0 C1' B:IMC4 4.7 346.3 1.0 C4 A:DT11 4.8 406.5 1.0 C4 B:DA3 4.8 356.2 1.0 C5 A:DT13 4.9 342.5 1.0 C8 B:DA5 5.0 357.4 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.