Atomistry » Silver » PDB 6lbw-7sdu » 7bsh
Atomistry »
  Silver »
    PDB 6lbw-7sdu »
      7bsh »

Silver in PDB 7bsh: Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)

Protein crystallography data

The structure of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant), PDB code: 7bsh was solved by J.Kondo, C.Cerretani, T.Vosch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.71 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 28.223, 35.960, 43.482, 90.00, 90.00, 90.00
R / Rfree (%) 7.7 / 8.8

Silver Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Silver atom in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) (pdb code 7bsh). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 18 binding sites of Silver where determined in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant), PDB code: 7bsh:
Jump to Silver binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Silver binding site 1 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 1 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag101

b:10.7
occ:1.00
N3 A:DC3 2.3 10.9 1.0
O2 A:DC1 2.4 12.1 1.0
N1 B:DA2 2.5 11.3 1.0
AG A:AG105 2.7 10.5 1.0
AG A:AG110 2.8 10.1 1.0
AG B:AG101 2.8 10.9 1.0
O2 A:DC3 2.9 12.4 1.0
AG A:AG102 2.9 9.9 1.0
C2 A:DC3 3.0 12.7 1.0
H61 B:DA2 3.1 15.0 1.0
H2 B:DA2 3.1 14.9 1.0
H42 A:DC3 3.1 14.5 1.0
C2 B:DA2 3.2 12.4 1.0
C4 A:DC3 3.4 11.6 1.0
C6 B:DA2 3.4 11.9 1.0
C2 A:DC1 3.4 11.2 1.0
N6 B:DA2 3.6 12.5 1.0
N4 A:DC3 3.6 12.1 1.0
N3 A:DC1 3.7 10.5 1.0
O6 A:DG9 3.8 11.3 1.0
H2' A:DA2 4.0 16.4 1.0
N3 A:DC4 4.0 10.1 1.0
AG B:AG102 4.0 10.0 1.0
H42 A:DC4 4.2 13.8 1.0
O2 B:DC1 4.2 11.8 1.0
N1 A:DC3 4.3 12.2 1.0
O2 B:DC3 4.3 13.1 1.0
H1' A:DC1 4.4 17.6 1.0
H62 B:DA2 4.4 15.0 1.0
N3 B:DC1 4.4 10.7 1.0
H41 A:DC3 4.4 14.5 1.0
C6 A:DG9 4.5 11.1 1.0
O2 A:DC4 4.5 9.8 1.0
N3 B:DA2 4.5 12.6 1.0
C2 A:DC4 4.6 9.8 1.0
C5 A:DC3 4.6 12.1 1.0
C5 B:DA2 4.7 12.8 1.0
N1 A:DC1 4.7 12.3 1.0
C2 B:DC1 4.7 11.3 1.0
N4 A:DC4 4.7 11.5 1.0
N3 B:DC3 4.8 12.2 1.0
C4 A:DC4 4.8 10.7 1.0
H2'' A:DA2 4.8 16.4 1.0
C2' A:DA2 4.8 13.7 1.0
H8 A:DA2 4.9 18.9 1.0
C6 A:DC3 5.0 12.5 1.0
C2 B:DC3 5.0 12.4 1.0

Silver binding site 2 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 2 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag102

b:9.9
occ:1.00
O6 A:DG9 2.3 11.3 1.0
N3 A:DC4 2.4 10.1 1.0
AG A:AG110 2.7 10.1 1.0
AG B:AG102 2.8 10.0 1.0
AG A:AG106 2.8 10.1 1.0
AG A:AG105 2.9 10.5 1.0
AG A:AG101 2.9 10.7 1.0
AG A:AG103 3.0 10.1 1.0
H42 A:DC4 3.0 13.8 1.0
AG A:AG111 3.1 10.2 1.0
O2 A:DC4 3.1 9.8 1.0
C2 A:DC4 3.2 9.8 1.0
C6 A:DG9 3.3 11.1 1.0
C4 A:DC4 3.4 10.7 1.0
N4 A:DC4 3.5 11.5 1.0
N1 A:DG9 3.7 11.0 1.0
N3 A:DC3 3.8 10.9 1.0
AG B:AG101 3.9 10.9 1.0
AG B:AG103 4.1 9.9 1.0
N3 A:DC8 4.2 11.6 1.0
O2 A:DC1 4.2 12.1 1.0
C2 A:DC3 4.3 12.7 1.0
O2 A:DC3 4.3 12.4 1.0
H42 A:DC3 4.3 14.5 1.0
O2 B:DC4 4.3 10.8 1.0
H41 A:DC4 4.4 13.8 1.0
C4 A:DC3 4.5 11.6 1.0
N1 A:DC4 4.5 10.4 1.0
N3 A:DC1 4.5 10.5 1.0
C5 A:DG9 4.6 11.4 1.0
C2 A:DC8 4.6 12.0 1.0
N4 A:DC3 4.6 12.1 1.0
O2 A:DC8 4.6 11.6 1.0
H42 A:DC8 4.6 14.0 1.0
O6 B:DG9 4.7 10.9 1.0
C5 A:DC4 4.7 11.2 1.0
N1 B:DG9 4.7 10.6 1.0
C4 A:DC8 4.7 10.9 1.0
C2 A:DC1 4.8 11.2 1.0
H42 B:DC1 4.8 14.2 1.0
N3 B:DC4 4.8 10.4 1.0
AG A:AG109 4.9 12.2 0.3
N4 A:DC8 4.9 11.6 1.0
N3 B:DC1 5.0 10.7 1.0

Silver binding site 3 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 3 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag103

b:10.1
occ:1.00
N3 A:DC8 2.2 11.6 1.0
AG A:AG111 2.7 10.2 1.0
AG B:AG103 2.8 9.9 1.0
AG A:AG106 2.8 10.1 1.0
AG A:AG107 2.9 10.3 1.0
AG B:AG105 2.9 10.1 1.0
H42 A:DC8 2.9 14.0 1.0
C2 A:DC8 3.0 12.0 1.0
AG A:AG102 3.0 9.9 1.0
O2 A:DC8 3.0 11.6 1.0
AG A:AG109 3.1 12.2 0.3
AG A:AG104 3.1 9.9 1.0
C4 A:DC8 3.2 10.9 1.0
N4 A:DC8 3.4 11.6 1.0
N3 A:DC4 3.7 10.1 1.0
O6 A:DG9 3.8 11.3 1.0
AG B:AG102 3.9 10.0 1.0
C2 A:DC4 4.0 9.8 1.0
O2 A:DC4 4.0 9.8 1.0
H41 A:DC8 4.2 14.0 1.0
N1 A:DC8 4.3 11.6 1.0
C4 A:DC4 4.4 10.7 1.0
AG B:AG106 4.4 12.3 0.3
N1 A:DG9 4.4 11.0 1.0
H42 A:DC4 4.5 13.8 1.0
C5 A:DC8 4.5 11.2 1.0
AG B:AG104 4.5 10.1 1.0
C6 A:DG9 4.5 11.1 1.0
N7 A:DG7 4.5 9.3 1.0
OP1 A:DA6 4.5 10.5 1.0
O2 B:DC8 4.6 10.2 1.0
H22 B:DG9 4.7 14.0 1.0
N4 A:DC4 4.7 11.5 1.0
N3 B:DC8 4.8 10.1 1.0
AG A:AG110 4.8 10.1 1.0
C6 A:DC8 4.9 11.7 1.0
N1 A:DC4 4.9 10.4 1.0
N1 B:DG9 4.9 10.6 1.0

Silver binding site 4 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 4 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag104

b:9.9
occ:1.00
N7 A:DG7 2.3 9.3 1.0
OP1 A:DA6 2.4 10.5 1.0
AG A:AG107 2.7 10.3 1.0
AG A:AG108 2.8 11.1 1.0
AG A:AG112 2.8 10.7 1.0
AG B:AG105 2.8 10.1 1.0
N3 A:DC8 3.0 11.6 1.0
AG A:AG103 3.1 10.1 1.0
C8 A:DG7 3.3 9.6 1.0
P A:DA6 3.3 10.7 1.0
H8 A:DG7 3.3 11.6 1.0
C5 A:DG7 3.4 10.7 1.0
OP2 A:DA6 3.5 11.5 1.0
C2 A:DC8 3.5 12.0 1.0
O2 A:DC8 3.6 11.6 1.0
H42 A:DC8 3.6 14.0 1.0
H8 A:DA6 3.7 15.8 1.0
AG B:AG104 3.7 10.1 1.0
O6 A:DG7 3.7 12.2 1.0
C4 A:DC8 3.7 10.9 1.0
AG A:AG109 3.8 12.2 0.3
N4 A:DC8 3.9 11.6 1.0
C6 A:DG7 3.9 12.0 1.0
N7 A:DA6 3.9 12.4 1.0
C8 A:DA6 4.0 13.1 1.0
O5' A:DA6 4.1 11.7 1.0
AG B:AG103 4.4 9.9 1.0
N9 A:DG7 4.5 10.4 1.0
H2'' A:3DR5 4.5 18.8 1.0
O6 B:DG7 4.5 11.5 1.0
C4 A:DG7 4.6 11.4 1.0
N1 A:DC8 4.6 11.6 1.0
O A:HOH209 4.6 13.4 1.0
H41 A:DC8 4.6 14.0 1.0
H3' A:3DR5 4.7 16.1 1.0
O3' A:3DR5 4.7 12.1 1.0
C5 A:DC8 4.8 11.2 1.0
N7 B:DA6 4.9 11.7 1.0

Silver binding site 5 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 5 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 5 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag105

b:10.5
occ:1.00
N3 A:DC1 2.3 10.5 1.0
O2 B:DC4 2.5 10.8 1.0
O2 B:DC3 2.7 13.1 1.0
AG A:AG101 2.7 10.7 1.0
AG B:AG101 2.8 10.9 1.0
AG B:AG102 2.8 10.0 1.0
H42 A:DC1 2.9 17.3 1.0
AG A:AG102 2.9 9.9 1.0
C2 A:DC1 3.1 11.2 1.0
O2 A:DC1 3.1 12.1 1.0
AG A:AG106 3.2 10.1 1.0
C2 B:DC4 3.3 10.9 1.0
C4 A:DC1 3.3 12.1 1.0
H2 B:DA2 3.3 14.9 1.0
N1 A:DG9 3.3 11.0 1.0
N4 A:DC1 3.4 14.4 1.0
N3 B:DC4 3.4 10.4 1.0
O6 A:DG9 3.4 11.3 1.0
C6 A:DG9 3.5 11.1 1.0
C2 B:DC3 3.6 12.4 1.0
N3 B:DC3 3.9 12.2 1.0
C2 B:DA2 3.9 12.4 1.0
AG A:AG110 3.9 10.1 1.0
N1 B:DA2 4.0 11.3 1.0
C2 A:DG9 4.2 12.3 1.0
H41 A:DC1 4.2 17.3 1.0
H22 A:DG9 4.4 15.4 1.0
N1 A:DC1 4.4 12.3 1.0
C5 A:DG9 4.5 11.4 1.0
N1 B:DC4 4.5 12.6 1.0
H42 A:DC3 4.5 14.5 1.0
N2 A:DG9 4.6 12.8 1.0
H1' B:DC4 4.6 16.2 1.0
C5 A:DC1 4.6 13.1 1.0
H1' B:DC3 4.6 19.5 1.0
C4 B:DC4 4.6 11.9 1.0
N3 A:DC3 4.8 10.9 1.0
N1 B:DC3 4.8 13.8 1.0
N3 B:DA2 4.9 12.6 1.0
H42 A:DC4 4.9 13.8 1.0
AG B:AG103 4.9 9.9 1.0
O6 B:DG9 4.9 10.9 1.0
H42 B:DC4 5.0 15.1 1.0
N3 A:DG9 5.0 12.7 1.0

Silver binding site 6 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 6 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 6 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag106

b:10.1
occ:1.00
N1 A:DG9 2.3 11.0 1.0
O2 B:DC4 2.6 10.8 1.0
AG B:AG103 2.7 9.9 1.0
H22 A:DG9 2.8 15.4 1.0
AG B:AG106 2.8 12.3 0.3
AG A:AG103 2.8 10.1 1.0
AG A:AG102 2.8 9.9 1.0
AG B:AG102 2.9 10.0 1.0
O6 A:DG9 3.1 11.3 1.0
C6 A:DG9 3.1 11.1 1.0
AG A:AG105 3.2 10.5 1.0
O2 A:DC8 3.2 11.6 1.0
AG A:AG107 3.2 10.3 1.0
C2 A:DG9 3.2 12.3 1.0
N2 A:DG9 3.3 12.8 1.0
C2 B:DC4 3.4 10.9 1.0
N3 B:DC4 3.8 10.4 1.0
C2 A:DC8 3.9 12.0 1.0
H42 A:DC1 4.0 17.3 1.0
AG A:AG111 4.0 10.2 1.0
N3 A:DC8 4.1 11.6 1.0
H21 A:DG9 4.1 15.4 1.0
H42 B:DC8 4.1 12.8 1.0
H1' B:DC4 4.2 16.2 1.0
C5 A:DG9 4.4 11.4 1.0
N3 A:DG9 4.5 12.7 1.0
N3 A:DC1 4.5 10.5 1.0
N1 B:DC4 4.5 12.6 1.0
N4 A:DC1 4.6 14.4 1.0
H42 A:DC4 4.7 13.8 1.0
N3 B:DC8 4.7 10.1 1.0
N3 A:DC4 4.9 10.1 1.0
C4 A:DG9 4.9 11.5 1.0
C1' B:DC4 4.9 13.5 1.0
N4 B:DC8 4.9 10.6 1.0
AG B:AG105 4.9 10.1 1.0
AG A:AG110 5.0 10.1 1.0
C4 A:DC1 5.0 12.1 1.0

Silver binding site 7 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 7 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 7 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag107

b:10.3
occ:1.00
AG B:AG106 2.6 12.3 0.3
O6 A:DG7 2.6 12.2 1.0
O2 A:DC8 2.7 11.6 1.0
AG A:AG104 2.7 9.9 1.0
AG A:AG108 2.8 11.1 1.0
AG B:AG104 2.8 10.1 1.0
AG B:AG103 2.8 9.9 1.0
AG A:AG103 2.9 10.1 1.0
AG A:AG106 3.2 10.1 1.0
AG B:AG105 3.4 10.1 1.0
C6 A:DG7 3.5 12.0 1.0
C2 A:DC8 3.5 12.0 1.0
N3 A:DC8 3.7 11.6 1.0
N7 A:DG7 3.7 9.3 1.0
OP1 B:DA6 3.8 10.2 1.0
C5 A:DG7 3.9 10.7 1.0
H42 B:DC8 4.1 12.8 1.0
H2'' B:3DR5 4.1 22.1 1.0
AG A:AG112 4.2 10.7 1.0
H22 A:DG9 4.2 15.4 1.0
OP2 B:DA6 4.3 12.5 1.0
P B:DA6 4.4 12.1 1.0
N3 B:DC8 4.4 10.1 1.0
H62 A:DA6 4.6 19.6 1.0
O3' B:3DR5 4.7 14.7 1.0
N1 A:DG7 4.7 13.8 1.0
N1 A:DG9 4.7 11.0 1.0
H1' A:DC8 4.7 15.8 1.0
N7 A:DA6 4.8 12.4 1.0
N1 A:DC8 4.8 11.6 1.0
AG A:AG111 4.8 10.2 1.0
N4 B:DC8 4.8 10.6 1.0
H1 A:DG7 4.9 16.5 1.0
N2 A:DG9 4.9 12.8 1.0
H3' B:3DR5 4.9 19.2 1.0
C8 A:DG7 4.9 9.6 1.0
C4 A:DC8 4.9 10.9 1.0

Silver binding site 8 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 8 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 8 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag108

b:11.1
occ:1.00
N7 A:DA6 2.2 12.4 1.0
OP2 B:DA6 2.3 12.5 1.0
O6 A:DG7 2.5 12.2 1.0
AG B:AG104 2.8 10.1 1.0
AG A:AG112 2.8 10.7 1.0
AG A:AG104 2.8 9.9 1.0
AG A:AG107 2.8 10.3 1.0
H62 A:DA6 2.9 19.6 1.0
H8 B:DA6 3.0 14.4 1.0
C8 A:DA6 3.2 13.1 1.0
C6 A:DG7 3.2 12.0 1.0
H8 A:DA6 3.3 15.8 1.0
C5 A:DA6 3.3 12.8 1.0
P B:DA6 3.3 12.1 1.0
N7 A:DG7 3.5 9.3 1.0
N6 A:DA6 3.6 16.4 1.0
C5 A:DG7 3.6 10.7 1.0
OP1 B:DA6 3.6 10.2 1.0
C8 B:DA6 3.7 12.0 1.0
N7 B:DA6 3.7 11.7 1.0
C6 A:DA6 3.9 14.4 1.0
O3' B:3DR5 4.1 14.7 1.0
AG B:AG105 4.1 10.1 1.0
H61 A:DA6 4.3 19.6 1.0
N1 A:DG7 4.4 13.8 1.0
N9 A:DA6 4.4 13.4 1.0
OP2 A:DA6 4.4 11.5 1.0
C4 A:DA6 4.5 14.6 1.0
H1 A:DG7 4.6 16.5 1.0
N7 B:DG7 4.6 9.3 1.0
OP1 A:DA6 4.7 10.5 1.0
C8 A:DG7 4.7 9.6 1.0
O5' B:DA6 4.7 12.8 1.0
AG B:AG106 4.7 12.3 0.3
O2 A:DC8 4.7 11.6 1.0
H2'' B:3DR5 4.8 22.1 1.0
C4 A:DG7 4.9 11.4 1.0
H5' B:DA6 4.9 16.0 1.0
P A:DA6 5.0 10.7 1.0
O6 B:DG7 5.0 11.5 1.0
AG B:AG103 5.0 9.9 1.0
N9 B:DA6 5.0 12.6 1.0

Silver binding site 9 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 9 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 9 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag109

b:12.2
occ:0.35
H42 A:DC8 2.4 14.0 1.0
H22 B:DG9 2.4 14.0 1.0
AG B:AG105 2.6 10.1 1.0
AG A:AG111 2.8 10.2 1.0
AG A:AG103 3.1 10.1 1.0
N2 B:DG9 3.2 11.7 1.0
N4 A:DC8 3.3 11.6 1.0
H2' A:3DR5 3.3 18.8 1.0
H2'' A:3DR5 3.3 18.8 1.0
H3' A:3DR5 3.4 16.1 1.0
H1' A:DC4 3.4 13.9 1.0
O2 A:DC4 3.4 9.8 1.0
H2'' A:DC4 3.5 14.1 1.0
H2' A:DC4 3.6 14.1 1.0
C2' A:3DR5 3.7 15.7 1.0
OP1 A:DA6 3.7 10.5 1.0
H21 B:DG9 3.7 14.0 1.0
C2 A:DC4 3.7 9.8 1.0
H41 A:DC8 3.7 14.0 1.0
C2' A:DC4 3.8 11.7 1.0
AG A:AG104 3.8 9.9 1.0
C1' A:DC4 3.8 11.6 1.0
N1 A:DC4 3.9 10.4 1.0
O2 B:DC8 4.0 10.2 1.0
H61 B:DA10 4.0 27.1 1.0
C3' A:3DR5 4.0 13.4 1.0
N1 B:DG9 4.0 10.6 1.0
N3 A:DC8 4.0 11.6 1.0
C2 B:DG9 4.1 10.4 1.0
C4 A:DC8 4.1 10.9 1.0
O6 B:DG7 4.2 11.5 1.0
N3 A:DC4 4.4 10.1 1.0
AG B:AG103 4.4 9.9 1.0
H62 B:DA10 4.4 27.1 1.0
P A:DA6 4.5 10.7 1.0
N6 B:DA10 4.6 22.6 1.0
AG A:AG112 4.6 10.7 1.0
O3' A:3DR5 4.8 12.1 1.0
OP2 A:DA6 4.8 11.5 1.0
C6 A:DC4 4.8 11.4 1.0
AG A:AG102 4.9 9.9 1.0
H42 B:DC1 4.9 14.2 1.0
H5' A:3DR5 4.9 18.4 1.0

Silver binding site 10 out of 18 in 7bsh

Go back to Silver Binding Sites List in 7bsh
Silver binding site 10 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 10 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag110

b:10.1
occ:1.00
N3 B:DC1 2.3 10.7 1.0
O2 A:DC4 2.5 9.8 1.0
AG A:AG102 2.7 9.9 1.0
AG B:AG101 2.7 10.9 1.0
O2 A:DC3 2.7 12.4 1.0
AG A:AG101 2.8 10.7 1.0
H42 B:DC1 2.9 14.2 1.0
AG B:AG102 3.0 10.0 1.0
O2 B:DC1 3.0 11.8 1.0
C2 B:DC1 3.0 11.3 1.0
AG A:AG111 3.1 10.2 1.0
N1 B:DG9 3.3 10.6 1.0
C4 B:DC1 3.3 11.1 1.0
C2 A:DC4 3.3 9.8 1.0
N4 B:DC1 3.4 11.9 1.0
O6 B:DG9 3.4 10.9 1.0
C6 B:DG9 3.4 10.9 1.0
C2 A:DC3 3.5 12.7 1.0
N3 A:DC4 3.5 10.1 1.0
H61 B:DA2 3.7 15.0 1.0
N3 A:DC3 3.8 10.9 1.0
AG A:AG105 3.9 10.5 1.0
C2 B:DG9 4.0 10.4 1.0
N6 B:DA2 4.1 12.5 1.0
N1 B:DA2 4.2 11.3 1.0
H41 B:DC1 4.2 14.2 1.0
H1' A:DC3 4.3 16.4 1.0
H22 B:DG9 4.3 14.0 1.0
C5 B:DG9 4.3 11.1 1.0
N1 B:DC1 4.4 11.4 1.0
N2 B:DG9 4.5 11.7 1.0
C6 B:DA2 4.5 11.9 1.0
N1 A:DC4 4.5 10.4 1.0
H42 B:DC3 4.6 15.9 1.0
H1' A:DC4 4.6 13.9 1.0
N1 A:DC3 4.6 12.2 1.0
C5 B:DC1 4.6 11.4 1.0
H62 B:DA2 4.6 15.0 1.0
H42 B:DC4 4.7 15.1 1.0
C4 A:DC4 4.8 10.7 1.0
N3 B:DG9 4.8 12.1 1.0
C4 B:DG9 4.8 11.7 1.0
AG A:AG103 4.8 10.1 1.0
N3 B:DC3 4.8 12.2 1.0
O6 A:DG9 4.9 11.3 1.0
C1' A:DC3 5.0 13.7 1.0
AG A:AG106 5.0 10.1 1.0

Reference:

C.Cerretani, J.Kondo, T.Vosch. Mutation of Position 5 As A Crystal Engineering Tool For A Nir-Emitting Dna-Stabilized AG16 Nanocluster. Crystengcomm V. 22 8136 2020.
ISSN: ISSN 1466-8033
DOI: 10.1039/D0CE01225D
Page generated: Sun Jul 6 21:06:08 2025

Last articles

Zn in 9QM9
Zn in 9S44
Zn in 9OFE
Zn in 9OFC
Zn in 9OFD
Zn in 9OF1
Zn in 9OFB
Zn in 9N0J
Zn in 9M5X
Zn in 9LGI
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy