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Silver in PDB 3uge: Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A

Protein crystallography data

The structure of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A, PDB code: 3uge was solved by M.J.Panzner, S.M.Billinovich, J.A.Parker, E.Bladholm, S.M.Berry, C.J.Ziegler, T.C.Leeper, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.35 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.746, 97.815, 110.029, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 24.5

Silver Binding Sites:

The binding sites of Silver atom in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A (pdb code 3uge). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 4 binding sites of Silver where determined in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A, PDB code: 3uge:
Jump to Silver binding site number: 1; 2; 3; 4;

Silver binding site 1 out of 4 in 3uge

Go back to Silver Binding Sites List in 3uge
Silver binding site 1 out of 4 in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag129

b:12.5
occ:1.00
ND1 A:HIS117 2.3 9.0 1.0
SG A:CYS112 2.4 9.8 1.0
ND1 A:HIS46 2.5 11.7 1.0
O A:GLY45 2.9 12.0 1.0
SD A:MET121 3.1 11.2 1.0
CG A:HIS117 3.3 10.7 1.0
CE1 A:HIS117 3.3 9.6 1.0
CE1 A:HIS46 3.4 11.8 1.0
CB A:CYS112 3.4 9.8 1.0
CG A:HIS46 3.5 11.3 1.0
CB A:HIS117 3.5 10.6 1.0
CA A:HIS46 3.5 10.6 1.0
CB A:PHE114 3.7 12.3 1.0
CB A:HIS46 3.7 10.7 1.0
CE A:MET121 3.8 11.1 1.0
C A:GLY45 3.8 11.1 1.0
N A:HIS46 4.1 10.7 1.0
NE2 A:HIS117 4.4 10.8 1.0
CD2 A:HIS117 4.4 11.3 1.0
NE2 A:HIS46 4.5 10.1 1.0
CG A:MET121 4.6 10.4 1.0
CG A:PHE114 4.6 12.7 1.0
CD2 A:HIS46 4.6 13.2 1.0
C A:HIS46 4.7 9.9 1.0
N A:ASN47 4.7 9.9 1.0
N A:PHE114 4.8 11.2 1.0
CA A:CYS112 4.8 9.3 1.0
CB A:MET121 4.8 10.8 1.0
CA A:PHE114 4.8 11.9 1.0
CA A:HIS117 5.0 10.4 1.0

Silver binding site 2 out of 4 in 3uge

Go back to Silver Binding Sites List in 3uge
Silver binding site 2 out of 4 in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ag129

b:16.0
occ:1.00
ND1 B:HIS117 2.2 10.0 1.0
ND1 B:HIS46 2.2 8.2 1.0
SG B:CYS112 2.3 10.3 1.0
O B:GLY45 2.7 10.6 1.0
SD B:MET121 3.1 8.8 1.0
CE1 B:HIS46 3.1 9.9 1.0
CE1 B:HIS117 3.1 10.2 1.0
CG B:HIS117 3.2 11.4 1.0
CG B:HIS46 3.3 10.3 1.0
CB B:CYS112 3.3 9.3 1.0
CA B:HIS46 3.4 10.3 1.0
CB B:HIS117 3.4 12.4 1.0
C B:GLY45 3.6 10.9 1.0
CB B:HIS46 3.7 8.8 1.0
CE B:MET121 3.7 8.9 1.0
CB B:PHE114 3.8 11.8 1.0
N B:HIS46 4.0 9.7 1.0
NE2 B:HIS117 4.3 10.3 1.0
NE2 B:HIS46 4.3 10.0 1.0
CD2 B:HIS117 4.3 12.6 1.0
CD2 B:HIS46 4.4 10.2 1.0
CG B:MET121 4.6 7.3 1.0
CG B:PHE114 4.6 11.2 1.0
C B:HIS46 4.6 9.8 1.0
N B:ASN47 4.7 10.4 1.0
CA B:CYS112 4.8 9.8 1.0
N B:PHE114 4.8 10.2 1.0
CB B:MET121 4.9 10.2 1.0
CA B:PHE114 4.9 10.9 1.0
CA B:GLY45 4.9 11.6 1.0
CA B:HIS117 5.0 11.8 1.0

Silver binding site 3 out of 4 in 3uge

Go back to Silver Binding Sites List in 3uge
Silver binding site 3 out of 4 in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ag129

b:15.4
occ:1.00
ND1 C:HIS117 2.2 12.2 1.0
ND1 C:HIS46 2.3 12.7 1.0
SG C:CYS112 2.4 8.5 1.0
O C:GLY45 2.6 11.0 1.0
CE1 C:HIS117 3.1 13.1 1.0
CG C:HIS117 3.2 12.1 1.0
SD C:MET121 3.2 9.3 1.0
CE1 C:HIS46 3.2 11.3 1.0
CG C:HIS46 3.4 11.5 1.0
CB C:CYS112 3.4 9.1 1.0
CA C:HIS46 3.4 10.9 1.0
CB C:HIS117 3.5 11.7 1.0
C C:GLY45 3.6 11.5 1.0
CB C:PHE114 3.7 12.3 1.0
CB C:HIS46 3.7 10.5 1.0
CE C:MET121 3.9 12.4 1.0
N C:HIS46 3.9 10.8 1.0
NE2 C:HIS117 4.2 12.3 1.0
CD2 C:HIS117 4.3 13.7 1.0
NE2 C:HIS46 4.4 12.2 1.0
CD2 C:HIS46 4.5 15.0 1.0
CG C:PHE114 4.5 12.0 1.0
CG C:MET121 4.6 8.9 1.0
C C:HIS46 4.6 10.1 1.0
N C:PHE114 4.7 11.3 1.0
N C:ASN47 4.7 9.9 1.0
CA C:PHE114 4.8 12.0 1.0
CA C:CYS112 4.8 8.8 1.0
CB C:MET121 4.9 8.6 1.0
CA C:GLY45 5.0 11.7 1.0
CA C:HIS117 5.0 11.0 1.0

Silver binding site 4 out of 4 in 3uge

Go back to Silver Binding Sites List in 3uge
Silver binding site 4 out of 4 in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ag129

b:11.7
occ:1.00
ND1 D:HIS46 2.3 8.6 1.0
SG D:CYS112 2.4 8.8 1.0
ND1 D:HIS117 2.4 8.9 1.0
O D:GLY45 2.9 12.1 1.0
SD D:MET121 3.1 11.2 1.0
CE1 D:HIS46 3.3 10.3 1.0
CG D:HIS117 3.3 10.2 1.0
CG D:HIS46 3.3 11.0 1.0
CB D:CYS112 3.4 10.1 1.0
CB D:HIS117 3.4 10.5 1.0
CE1 D:HIS117 3.4 7.4 1.0
CA D:HIS46 3.5 11.1 1.0
CB D:HIS46 3.7 11.1 1.0
CB D:PHE114 3.8 9.8 1.0
CE D:MET121 3.9 8.2 1.0
C D:GLY45 3.9 11.2 1.0
N D:HIS46 4.1 10.4 1.0
NE2 D:HIS46 4.4 9.8 1.0
CD2 D:HIS117 4.5 11.2 1.0
CD2 D:HIS46 4.5 13.7 1.0
NE2 D:HIS117 4.5 10.7 1.0
CG D:MET121 4.5 11.8 1.0
CG D:PHE114 4.6 10.1 1.0
C D:HIS46 4.7 10.2 1.0
N D:ASN47 4.7 9.3 1.0
N D:PHE114 4.8 8.9 1.0
CA D:CYS112 4.8 9.1 1.0
CB D:MET121 4.9 10.7 1.0
CA D:PHE114 4.9 9.7 1.0
CA D:HIS117 5.0 10.7 1.0

Reference:

M.J.Panzner, S.M.Billinovich, J.A.Parker, E.Bladholm, S.M.Berry, C.J.Ziegler, T.C.Leeper. Silver Metallation of Pseudomonas Aeruginosa Azurin To Be Published.
Page generated: Sun Jul 6 20:48:43 2025

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