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Silver in PDB 3opo: Crystal Structure of the Membrane Fusion Protein Cusb From Escherichia Coli

Protein crystallography data

The structure of Crystal Structure of the Membrane Fusion Protein Cusb From Escherichia Coli, PDB code: 3opo was solved by C.-C.Su, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.31 / 3.85
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.803, 114.678, 259.166, 90.00, 90.00, 90.00
R / Rfree (%) 29.5 / 34

Silver Binding Sites:

The binding sites of Silver atom in the Crystal Structure of the Membrane Fusion Protein Cusb From Escherichia Coli (pdb code 3opo). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 2 binding sites of Silver where determined in the Crystal Structure of the Membrane Fusion Protein Cusb From Escherichia Coli, PDB code: 3opo:
Jump to Silver binding site number: 1; 2;

Silver binding site 1 out of 2 in 3opo

Go back to Silver Binding Sites List in 3opo
Silver binding site 1 out of 2 in the Crystal Structure of the Membrane Fusion Protein Cusb From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Crystal Structure of the Membrane Fusion Protein Cusb From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ag414

b:0.7
occ:1.00
SD B:MET324 2.4 0.2 1.0
CG B:MET324 2.9 0.8 1.0
NH1 B:ARG368 2.9 0.0 1.0
CE B:MET324 3.1 0.7 1.0
CG B:PHE358 3.4 0.3 1.0
CB B:MET324 3.4 0.6 1.0
CB B:PHE358 3.6 0.5 1.0
CD2 B:PHE358 3.6 0.8 1.0
CZ B:ARG368 3.8 0.2 1.0
CD1 B:PHE358 3.8 0.2 1.0
CE2 B:PHE358 4.2 0.8 1.0
CD B:ARG368 4.3 0.1 1.0
NE B:ARG368 4.4 0.4 1.0
CE1 B:PHE358 4.4 0.3 1.0
CA B:ARG368 4.5 0.1 1.0
CZ B:PHE358 4.6 1.0 1.0
NH2 B:ARG368 4.7 0.7 1.0
O B:LEU367 4.7 0.2 1.0
CA B:MET324 4.7 0.3 1.0
N B:ARG368 4.7 0.8 1.0
CB B:ALA366 4.9 0.4 1.0
C B:LEU367 4.9 0.6 1.0

Silver binding site 2 out of 2 in 3opo

Go back to Silver Binding Sites List in 3opo
Silver binding site 2 out of 2 in the Crystal Structure of the Membrane Fusion Protein Cusb From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Crystal Structure of the Membrane Fusion Protein Cusb From Escherichia Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag414

b:0.6
occ:1.00
SD A:MET324 2.6 0.8 1.0
CG A:GLU322 2.8 0.5 1.0
OE2 A:GLU322 3.0 0.8 1.0
CG A:MET324 3.1 0.2 1.0
NH2 A:ARG368 3.2 0.8 1.0
CD A:GLU322 3.3 0.3 1.0
O A:GLU322 3.9 0.7 1.0
CB B:TRP256 4.1 0.5 1.0
CE A:MET324 4.2 0.3 1.0
CB A:GLU322 4.3 0.0 1.0
CZ A:PHE358 4.4 0.1 1.0
CZ A:ARG368 4.5 0.8 1.0
OE1 A:GLU322 4.5 1.0 1.0
CE1 A:PHE358 4.6 0.4 1.0
CB A:MET324 4.6 0.0 1.0
CE2 A:PHE358 4.6 0.7 1.0
C A:GLU322 4.7 0.4 1.0
CD1 A:PHE358 4.9 0.8 1.0
O A:PRO323 4.9 0.5 1.0
CD2 A:PHE358 4.9 0.6 1.0
CG B:TRP256 5.0 0.3 1.0
O B:TRP256 5.0 0.8 1.0
CA A:GLU322 5.0 0.3 1.0

Reference:

C.C.Su, F.Yang, F.Long, D.Reyon, M.D.Routh, D.W.Kuo, A.K.Mokhtari, J.D.Van Ornam, K.L.Rabe, J.A.Hoy, Y.J.Lee, K.R.Rajashankar, E.W.Yu. Crystal Structure of the Membrane Fusion Protein Cusb From Escherichia Coli. J.Mol.Biol. V. 393 342 2009.
ISSN: ISSN 0022-2836
PubMed: 19695261
DOI: 10.1016/J.JMB.2009.08.029
Page generated: Sun Jul 6 20:48:19 2025

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