Atomistry » Silver » PDB 8dyk-9gdm » 9gdm
Atomistry »
  Silver »
    PDB 8dyk-9gdm »
      9gdm »

Silver in PDB 9gdm: Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions

Silver Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Silver atom in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions (pdb code 9gdm). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 12 binding sites of Silver where determined in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions, PDB code: 9gdm:
Jump to Silver binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Silver binding site 1 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 1 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag101

b:0.0
occ:1.00
N1 B:7GU14 2.2 0.0 1.0
N3 A:DC11 2.2 0.0 1.0
O6 B:7GU14 2.8 0.0 1.0
H41 A:DC11 2.8 0.0 1.0
C6 B:7GU14 2.9 0.0 1.0
N1 B:7DA15 2.9 0.0 1.0
N3 A:DC12 2.9 0.0 1.0
O2 A:DC11 3.0 0.0 1.0
C2 A:DC11 3.0 0.0 1.0
C2 B:7DA15 3.1 0.0 1.0
H2 B:7DA15 3.1 0.0 1.0
C2 A:DC12 3.1 0.0 1.0
HN21 B:7GU14 3.2 0.0 1.0
C4 A:DC11 3.2 0.0 1.0
C2 B:7GU14 3.3 0.0 1.0
C4 A:DC12 3.4 0.0 1.0
N4 A:DC11 3.4 0.0 1.0
O2 A:DC12 3.4 0.0 1.0
N2 B:7GU14 3.6 0.0 1.0
C6 B:7DA15 3.6 0.0 1.0
N1 A:DC12 3.7 0.0 1.0
AG A:AG102 3.9 0.0 1.0
N3 B:7DA15 3.9 0.0 1.0
AG B:AG101 3.9 0.0 1.0
N4 A:DC12 3.9 0.0 1.0
C5 A:DC12 4.0 0.0 1.0
H41 A:DC12 4.0 0.0 1.0
C6 A:DC12 4.2 0.0 1.0
HN61 B:7DA15 4.2 0.0 1.0
N6 B:7DA15 4.2 0.0 1.0
C5 B:7GU14 4.3 0.0 1.0
C5 B:7DA15 4.3 0.0 1.0
N1 A:DC11 4.3 0.0 1.0
H42 A:DC11 4.4 0.0 1.0
H1' A:DC12 4.4 0.0 1.0
C4 B:7DA15 4.4 0.0 1.0
C5 A:DC11 4.5 0.0 1.0
N3 B:7GU14 4.6 0.0 1.0
HN22 B:7GU14 4.6 0.0 1.0
H42 A:DC12 4.6 0.0 1.0
C1' A:DC12 4.6 0.0 1.0
H5 A:DC12 4.7 0.0 1.0
O6 B:7GU13 4.9 0.0 1.0
C4 B:7GU14 4.9 0.0 1.0
C6 A:DC11 5.0 0.0 1.0
HN62 B:7DA15 5.0 0.0 1.0

Silver binding site 2 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 2 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag102

b:0.0
occ:1.00
N3 A:DT10 2.1 0.0 1.0
N1 B:7DA15 2.2 0.0 1.0
HN61 B:7DA15 2.7 0.0 1.0
C4 A:DT10 3.0 0.0 1.0
C2 A:DT10 3.0 0.0 1.0
O4 A:DT10 3.1 0.0 1.0
C6 B:7DA15 3.1 0.0 1.0
N3 A:DC11 3.1 0.0 1.0
O2 A:DT10 3.1 0.0 1.0
C2 B:7DA15 3.2 0.0 1.0
N6 B:7DA15 3.2 0.0 1.0
H2 B:7DA15 3.2 0.0 1.0
AG B:AG102 3.3 0.0 1.0
N3 B:DC16 3.4 0.0 1.0
C2 A:DC11 3.4 0.0 1.0
O2 B:DC16 3.5 0.0 1.0
C4 A:DC11 3.6 0.0 1.0
C2 B:DC16 3.6 0.0 1.0
O2 A:DC11 3.7 0.0 1.0
AG A:AG101 3.9 0.0 1.0
N4 A:DC11 4.0 0.0 1.0
H41 A:DC11 4.0 0.0 1.0
N1 A:DC11 4.1 0.0 1.0
HN62 B:7DA15 4.2 0.0 1.0
C5 A:DC11 4.3 0.0 1.0
C4 B:DC16 4.3 0.0 1.0
N1 A:DT10 4.3 0.0 1.0
H41 B:DC16 4.4 0.0 1.0
C5 B:7DA15 4.4 0.0 1.0
C5 A:DT10 4.4 0.0 1.0
N3 B:7DA15 4.5 0.0 1.0
C6 A:DC11 4.5 0.0 1.0
O6 A:7GU9 4.6 0.0 1.0
N1 A:7GU9 4.6 0.0 1.0
N4 B:DC16 4.6 0.0 1.0
H42 A:DC11 4.7 0.0 1.0
N1 B:DC16 4.7 0.0 1.0
C6 A:7GU9 4.8 0.0 1.0
O6 B:7GU14 4.9 0.0 1.0
C6 A:DT10 4.9 0.0 1.0
C4 B:7DA15 4.9 0.0 1.0
H5 A:DC11 5.0 0.0 1.0

Silver binding site 3 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 3 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag103

b:0.0
occ:1.00
N3 B:DT17 2.1 0.0 1.0
N1 A:7DA8 2.2 0.0 1.0
HN61 A:7DA8 2.6 0.0 1.0
N1 A:7GU9 2.8 0.0 1.0
C4 B:DT17 3.0 0.0 1.0
N3 B:DC18 3.0 0.0 1.0
C2 B:DT17 3.0 0.0 1.0
O4 B:DT17 3.1 0.0 1.0
HN21 A:7GU9 3.1 0.0 1.0
C6 A:7DA8 3.1 0.0 1.0
O2 B:DT17 3.1 0.0 1.0
C2 A:7GU9 3.2 0.0 1.0
N6 A:7DA8 3.2 0.0 1.0
C2 A:7DA8 3.2 0.0 1.0
C2 B:DC18 3.2 0.0 1.0
H2 A:7DA8 3.2 0.0 1.0
C6 A:7GU9 3.3 0.0 1.0
C4 B:DC18 3.4 0.0 1.0
N2 A:7GU9 3.4 0.0 1.0
O2 B:DC18 3.6 0.0 1.0
O6 A:7GU9 3.7 0.0 1.0
AG B:AG102 3.7 0.0 1.0
N1 B:DC18 3.8 0.0 1.0
C5 B:DC18 4.0 0.0 1.0
N4 B:DC18 4.0 0.0 1.0
N3 A:7GU9 4.0 0.0 1.0
HN22 A:7GU9 4.0 0.0 1.0
AG B:AG103 4.0 0.0 1.0
C5 A:7GU9 4.1 0.0 1.0
H41 B:DC18 4.1 0.0 1.0
C6 B:DC18 4.1 0.0 1.0
HN62 A:7DA8 4.2 0.0 1.0
N1 B:DT17 4.3 0.0 1.0
C4 A:7GU9 4.4 0.0 1.0
C5 A:7DA8 4.4 0.0 1.0
C5 B:DT17 4.4 0.0 1.0
H41 B:DC16 4.5 0.0 1.0
H1' B:DC18 4.5 0.0 1.0
N3 A:7DA8 4.5 0.0 1.0
H42 B:DC18 4.6 0.0 1.0
C1' B:DC18 4.6 0.0 1.0
H5 B:DC18 4.7 0.0 1.0
O6 A:7GU7 4.9 0.0 1.0
C6 B:DT17 4.9 0.0 1.0
H6 B:DC18 4.9 0.0 1.0
C4 A:7DA8 5.0 0.0 1.0

Silver binding site 4 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 4 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag104

b:0.0
occ:1.00
N1 B:7GU19 2.2 0.0 1.0
N3 A:DC6 2.2 0.0 1.0
H41 A:DC6 2.8 0.0 1.0
O6 B:7GU19 2.8 0.0 1.0
C6 B:7GU19 2.9 0.0 1.0
C2 A:DC6 3.0 0.0 1.0
HN21 B:7GU19 3.0 0.0 1.0
O2 A:DC6 3.0 0.0 1.0
N1 B:7DA20 3.1 0.0 1.0
C6 A:7GU7 3.2 0.0 1.0
C4 A:DC6 3.2 0.0 1.0
C2 B:7DA20 3.2 0.0 1.0
N1 A:7GU7 3.2 0.0 1.0
H2 B:7DA20 3.3 0.0 1.0
C2 B:7GU19 3.3 0.0 1.0
N4 A:DC6 3.4 0.0 1.0
C5 A:7GU7 3.5 0.0 1.0
O6 A:7GU7 3.6 0.0 1.0
N2 B:7GU19 3.6 0.0 1.0
C2 A:7GU7 3.6 0.0 1.0
C6 B:7DA20 3.8 0.0 1.0
C4 A:7GU7 3.9 0.0 1.0
N3 B:7DA20 3.9 0.0 1.0
N3 A:7GU7 4.0 0.0 1.0
AG A:AG105 4.0 0.0 1.0
HN21 A:7GU7 4.3 0.0 1.0
C7 A:7GU7 4.3 0.0 1.0
N2 A:7GU7 4.3 0.0 1.0
C5 B:7GU19 4.3 0.0 1.0
N1 A:DC6 4.3 0.0 1.0
H42 A:DC6 4.4 0.0 1.0
C5 B:7DA20 4.4 0.0 1.0
N6 B:7DA20 4.4 0.0 1.0
HN61 B:7DA20 4.4 0.0 1.0
C4 B:7DA20 4.4 0.0 1.0
AG B:AG103 4.4 0.0 1.0
C5 A:DC6 4.5 0.0 1.0
HN22 B:7GU19 4.6 0.0 1.0
H41 B:DC18 4.6 0.0 1.0
N3 B:7GU19 4.6 0.0 1.0
H7 A:7GU7 4.7 0.0 1.0
N9 A:7GU7 4.7 0.0 1.0
HN22 A:7GU7 4.8 0.0 1.0
C6 A:DC6 5.0 0.0 1.0
C4 B:7GU19 5.0 0.0 1.0
C8 A:7GU7 5.0 0.0 1.0

Silver binding site 5 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 5 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 5 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag105

b:0.0
occ:1.00
N3 A:DT5 2.1 0.0 1.0
N1 B:7DA20 2.2 0.0 1.0
HN61 B:7DA20 2.7 0.0 1.0
N1 B:7GU21 2.8 0.0 1.0
C4 A:DT5 3.0 0.0 1.0
N3 A:DC6 3.0 0.0 1.0
C2 A:DT5 3.0 0.0 1.0
HN22 B:7GU21 3.1 0.0 1.0
O4 A:DT5 3.1 0.0 1.0
C6 B:7DA20 3.1 0.0 1.0
C2 B:7GU21 3.1 0.0 1.0
O2 A:DT5 3.1 0.0 1.0
N6 B:7DA20 3.2 0.0 1.0
C2 B:7DA20 3.2 0.0 1.0
C2 A:DC6 3.2 0.0 1.0
H2 B:7DA20 3.2 0.0 1.0
N2 B:7GU21 3.3 0.0 1.0
C6 B:7GU21 3.4 0.0 1.0
C4 A:DC6 3.5 0.0 1.0
O2 A:DC6 3.5 0.0 1.0
AG A:AG106 3.7 0.0 1.0
N1 A:DC6 3.8 0.0 1.0
O6 B:7GU21 3.8 0.0 1.0
HN21 B:7GU21 3.9 0.0 1.0
N3 B:7GU21 3.9 0.0 1.0
AG A:AG104 4.0 0.0 1.0
C5 A:DC6 4.0 0.0 1.0
N4 A:DC6 4.0 0.0 1.0
C5 B:7GU21 4.1 0.0 1.0
H41 A:DC6 4.1 0.0 1.0
HN62 B:7DA20 4.2 0.0 1.0
C6 A:DC6 4.2 0.0 1.0
N1 A:DT5 4.3 0.0 1.0
C4 B:7GU21 4.3 0.0 1.0
C5 B:7DA20 4.4 0.0 1.0
C5 A:DT5 4.4 0.0 1.0
H1' A:DC6 4.5 0.0 1.0
H41 A:DC4 4.5 0.0 1.0
N3 B:7DA20 4.5 0.0 1.0
C1' A:DC6 4.7 0.0 1.0
H42 A:DC6 4.7 0.0 1.0
H5 A:DC6 4.8 0.0 1.0
O6 B:7GU19 4.9 0.0 1.0
C6 A:DT5 4.9 0.0 1.0
C4 B:7DA20 5.0 0.0 1.0

Silver binding site 6 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 6 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 6 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag106

b:0.0
occ:1.00
N1 B:7GU21 2.2 0.0 1.0
N3 A:DC4 2.2 0.0 1.0
O6 B:7GU21 2.8 0.0 1.0
H41 A:DC4 2.8 0.0 1.0
C6 B:7GU21 2.9 0.0 1.0
N3 A:DT5 2.9 0.0 1.0
C2 A:DC4 3.0 0.0 1.0
O2 A:DC4 3.0 0.0 1.0
HN22 B:7GU21 3.1 0.0 1.0
C2 A:DT5 3.2 0.0 1.0
C4 A:DC4 3.2 0.0 1.0
AG B:AG104 3.3 0.0 1.0
C2 B:7GU21 3.3 0.0 1.0
O2 A:DT5 3.4 0.0 1.0
N4 A:DC4 3.4 0.0 1.0
N3 B:DT22 3.4 0.0 1.0
C4 A:DT5 3.5 0.0 1.0
N2 B:7GU21 3.6 0.0 1.0
AG A:AG105 3.7 0.0 1.0
O2 B:DT22 3.8 0.0 1.0
C2 B:DT22 3.8 0.0 1.0
N1 A:DT5 3.9 0.0 1.0
O4 A:DT5 3.9 0.0 1.0
C4 B:DT22 4.1 0.0 1.0
C5 A:DT5 4.2 0.0 1.0
C5 B:7GU21 4.3 0.0 1.0
HN62 A:7DA3 4.3 0.0 1.0
N1 A:DC4 4.3 0.0 1.0
O4 B:DT22 4.4 0.0 1.0
H42 A:DC4 4.4 0.0 1.0
C6 A:DT5 4.4 0.0 1.0
HN61 B:7DA20 4.4 0.0 1.0
C5 A:DC4 4.5 0.0 1.0
N1 A:7DA3 4.5 0.0 1.0
HN21 B:7GU21 4.6 0.0 1.0
N3 B:7GU21 4.6 0.0 1.0
N6 A:7DA3 4.6 0.0 1.0
H1' A:DT5 4.7 0.0 1.0
C6 A:7DA3 4.8 0.0 1.0
C1' A:DT5 4.8 0.0 1.0
N1 B:DT22 4.8 0.0 1.0
C4 B:7GU21 4.9 0.0 1.0
C6 A:DC4 5.0 0.0 1.0
N6 B:7DA20 5.0 0.0 1.0

Silver binding site 7 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 7 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 7 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag107

b:0.0
occ:1.00
N1 A:7GU1 2.2 0.0 1.0
N3 B:DC24 2.2 0.0 1.0
O6 A:7GU1 2.8 0.0 1.0
C6 A:7GU1 2.9 0.0 1.0
H41 B:DC24 2.9 0.0 1.0
N1 A:7GU2 2.9 0.0 1.0
HN22 A:7GU1 3.0 0.0 1.0
C2 B:DC24 3.0 0.0 1.0
O2 B:DC24 3.1 0.0 1.0
HN21 A:7GU2 3.1 0.0 1.0
C4 B:DC24 3.2 0.0 1.0
C2 A:7GU2 3.3 0.0 1.0
C2 A:7GU1 3.3 0.0 1.0
N4 B:DC24 3.4 0.0 1.0
N2 A:7GU2 3.4 0.0 1.0
N2 A:7GU1 3.6 0.0 1.0
C6 A:7GU2 3.6 0.0 1.0
AG B:AG105 3.8 0.0 1.0
O6 A:7GU2 4.0 0.0 1.0
HN22 A:7GU2 4.0 0.0 1.0
N3 A:7GU2 4.1 0.0 1.0
C5 A:7GU1 4.3 0.0 1.0
N1 B:DC24 4.3 0.0 1.0
C5 A:7GU2 4.4 0.0 1.0
H42 B:DC24 4.4 0.0 1.0
C5 B:DC24 4.5 0.0 1.0
HN21 A:7GU1 4.5 0.0 1.0
C4 A:7GU2 4.6 0.0 1.0
N3 A:7GU1 4.6 0.0 1.0
H41 B:DC23 4.8 0.0 1.0
C4 A:7GU1 4.9 0.0 1.0
C6 B:DC24 5.0 0.0 1.0

Silver binding site 8 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 8 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 8 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ag101

b:0.0
occ:1.00
N1 B:7GU13 2.2 0.0 1.0
N3 A:DC12 2.2 0.0 1.0
O6 B:7GU13 2.8 0.0 1.0
H41 A:DC12 2.9 0.0 1.0
C6 B:7GU13 2.9 0.0 1.0
N1 B:7GU14 3.0 0.0 1.0
HN21 B:7GU13 3.0 0.0 1.0
C2 A:DC12 3.0 0.0 1.0
O2 A:DC12 3.1 0.0 1.0
HN21 B:7GU14 3.1 0.0 1.0
C4 A:DC12 3.2 0.0 1.0
C2 B:7GU14 3.3 0.0 1.0
C2 B:7GU13 3.3 0.0 1.0
N4 A:DC12 3.4 0.0 1.0
N2 B:7GU14 3.4 0.0 1.0
N2 B:7GU13 3.6 0.0 1.0
C6 B:7GU14 3.6 0.0 1.0
AG A:AG101 3.9 0.0 1.0
O6 B:7GU14 4.0 0.0 1.0
HN22 B:7GU14 4.0 0.0 1.0
N3 B:7GU14 4.1 0.0 1.0
C5 B:7GU13 4.3 0.0 1.0
C5 B:7GU14 4.3 0.0 1.0
N1 A:DC12 4.4 0.0 1.0
H42 A:DC12 4.4 0.0 1.0
C5 A:DC12 4.5 0.0 1.0
C4 B:7GU14 4.5 0.0 1.0
HN22 B:7GU13 4.5 0.0 1.0
N3 B:7GU13 4.6 0.0 1.0
H41 A:DC11 4.9 0.0 1.0
C4 B:7GU13 5.0 0.0 1.0
C6 A:DC12 5.0 0.0 1.0

Silver binding site 9 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 9 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 9 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ag102

b:0.0
occ:1.00
N1 A:7GU9 2.2 0.0 1.0
N3 B:DC16 2.2 0.0 1.0
O6 A:7GU9 2.8 0.0 1.0
H41 B:DC16 2.9 0.0 1.0
C6 A:7GU9 2.9 0.0 1.0
N3 B:DT17 2.9 0.0 1.0
C2 B:DC16 3.0 0.0 1.0
O2 B:DC16 3.0 0.0 1.0
C2 B:DT17 3.1 0.0 1.0
HN21 A:7GU9 3.2 0.0 1.0
C4 B:DC16 3.2 0.0 1.0
AG A:AG102 3.3 0.0 1.0
C2 A:7GU9 3.3 0.0 1.0
N3 A:DT10 3.3 0.0 1.0
O2 B:DT17 3.3 0.0 1.0
N4 B:DC16 3.4 0.0 1.0
C4 B:DT17 3.5 0.0 1.0
N2 A:7GU9 3.6 0.0 1.0
O2 A:DT10 3.6 0.0 1.0
C2 A:DT10 3.7 0.0 1.0
AG A:AG103 3.7 0.0 1.0
N1 B:DT17 3.8 0.0 1.0
O4 B:DT17 4.0 0.0 1.0
C4 A:DT10 4.1 0.0 1.0
C5 B:DT17 4.2 0.0 1.0
C5 A:7GU9 4.3 0.0 1.0
C6 B:DT17 4.3 0.0 1.0
N1 B:DC16 4.3 0.0 1.0
H42 B:DC16 4.4 0.0 1.0
O4 A:DT10 4.4 0.0 1.0
HN61 B:7DA15 4.4 0.0 1.0
HN61 A:7DA8 4.5 0.0 1.0
C5 B:DC16 4.5 0.0 1.0
N3 A:7GU9 4.6 0.0 1.0
HN22 A:7GU9 4.6 0.0 1.0
N1 B:7DA15 4.6 0.0 1.0
H1' B:DT17 4.6 0.0 1.0
C1' B:DT17 4.7 0.0 1.0
N1 A:DT10 4.8 0.0 1.0
N6 B:7DA15 4.8 0.0 1.0
C4 A:7GU9 4.9 0.0 1.0
C6 B:7DA15 4.9 0.0 1.0
C6 B:DC16 5.0 0.0 1.0

Silver binding site 10 out of 12 in 9gdm

Go back to Silver Binding Sites List in 9gdm
Silver binding site 10 out of 12 in the Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 10 of Solution Structure of A Silver Ion Mediated Dna Duplex with Universal 7-Deazapurine Substitutions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ag103

b:0.0
occ:1.00
N1 A:7GU7 2.2 0.0 1.0
N3 B:DC18 2.2 0.0 1.0
H41 B:DC18 2.8 0.0 1.0
O6 A:7GU7 2.8 0.0 1.0
C6 A:7GU7 2.9 0.0 1.0
C2 B:DC18 3.0 0.0 1.0
O2 B:DC18 3.0 0.0 1.0
N1 A:7DA8 3.1 0.0 1.0
HN21 A:7GU7 3.1 0.0 1.0
C2 A:7DA8 3.2 0.0 1.0
C4 B:DC18 3.2 0.0 1.0
H2 A:7DA8 3.2 0.0 1.0
C6 B:7GU19 3.3 0.0 1.0
C2 A:7GU7 3.3 0.0 1.0
N1 B:7GU19 3.4 0.0 1.0
N4 B:DC18 3.4 0.0 1.0
C5 B:7GU19 3.5 0.0 1.0
N2 A:7GU7 3.6 0.0 1.0
C2 B:7GU19 3.6 0.0 1.0
O6 B:7GU19 3.7 0.0 1.0
C6 A:7DA8 3.8 0.0 1.0
C4 B:7GU19 3.8 0.0 1.0
N3 B:7GU19 3.9 0.0 1.0
N3 A:7DA8 3.9 0.0 1.0
AG A:AG103 4.0 0.0 1.0
C7 B:7GU19 4.3 0.0 1.0
C5 A:7GU7 4.3 0.0 1.0
N1 B:DC18 4.4 0.0 1.0
H42 B:DC18 4.4 0.0 1.0
N2 B:7GU19 4.4 0.0 1.0
C5 A:7DA8 4.4 0.0 1.0
N6 A:7DA8 4.4 0.0 1.0
HN61 A:7DA8 4.4 0.0 1.0
AG A:AG104 4.4 0.0 1.0
C4 A:7DA8 4.4 0.0 1.0
C5 B:DC18 4.5 0.0 1.0
HN22 A:7GU7 4.6 0.0 1.0
N3 A:7GU7 4.6 0.0 1.0
N9 B:7GU19 4.6 0.0 1.0
H41 A:DC6 4.7 0.0 1.0
H7 B:7GU19 4.7 0.0 1.0
HN21 B:7GU19 4.9 0.0 1.0
C8 B:7GU19 4.9 0.0 1.0
C4 A:7GU7 5.0 0.0 1.0
C6 B:DC18 5.0 0.0 1.0

Reference:

U.Javornik, A.Perez-Romero, C.Lopez-Chamorro, R.M.Smith, J.A.Dobado, O.Palacios, M.K.Bera, M.Nyman, J.Plavec, M.A.Galindo. Unveiling the Solution Structure of A Dna Duplex with Continuous Silver-Modified Watson-Crick Base Pairs. Nat Commun V. 15 7763 2024.
ISSN: ESSN 2041-1723
PubMed: 39237564
DOI: 10.1038/S41467-024-51876-8
Page generated: Sat Sep 28 08:33:05 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy