Silver in PDB 8eg4: [Iu:Ag+:Iu] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [Iu:Ag+:Iu] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 8eg4 was solved by S.Vecchioni, B.Lu, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.98 / 4.18
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.343, 106.343, 89.835, 90, 90, 120
R / Rfree (%)	28.7 / 35.4

The structure of [Iu:Ag+:Iu] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice also contains other interesting chemical elements:

Iodine

(I)

2 atoms

The binding sites of Silver atom in the [Iu:Ag+:Iu] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 8eg4). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [Iu:Ag+:Iu] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 8eg4:

Silver binding site 1 out of 1 in the [Iu:Ag+:Iu] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [Iu:Ag+:Iu] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag101 b:268.9 occ:1.00 O4 B:5IU4 2.6 304.2 1.0 N6 B:DA3 3.1 288.4 1.0 O4 A:DT11 3.3 294.4 1.0 O4 A:5IU12 3.5 294.6 1.0 C4 B:5IU4 3.7 305.9 1.0 C4 A:DT11 4.0 291.9 1.0 C6 B:DA3 4.1 290.1 1.0 I5 B:5IU4 4.1 305.2 1.0 N7 B:DA3 4.3 289.9 1.0 C5 B:5IU4 4.4 306.9 1.0 N3 A:DT11 4.5 287.5 1.0 C5 B:DA3 4.5 290.8 1.0 C4 A:5IU12 4.6 291.4 1.0 N3 B:5IU4 4.7 307.1 1.0 I5 A:5IU12 4.7 296.8 1.0 N6 B:DA5 4.8 297.2 1.0 C5 A:DT11 4.9 293.5 1.0

S.Vecchioni, B.Lu, W.Livernois, Y.P.Ohayon, J.B.Yoder, C.F.Yang, K.Woloszyn, W.Bernfeld, M.P.Anantram, J.W.Canary, W.A.Hendrickson, L.J.Rothschild, C.Mao, S.J.Wind, N.C.Seeman, R.Sha. Metal-Mediated Dna Nanotechnology in 3D: Structural Library By Templated Diffraction. Adv Mater 01938 2023.
ISSN: ISSN 1521-4095
PubMed: 36939292
DOI: 10.1002/ADMA.202201938