Silver in PDB 8e4e: [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 8e4e was solved by S.Vecchioni, B.Lu, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.43 / 4.19
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.126, 105.126, 92.433, 90, 90, 120
R / Rfree (%)	22.2 / 23.8

The binding sites of Silver atom in the [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 8e4e). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 8e4e:

Silver binding site 1 out of 1 in the [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag101 b:150.0 occ:1.00 O4 B:DT4 2.1 259.2 1.0 O4 A:DT12 2.9 222.0 1.0 C4 B:DT4 3.2 266.7 1.0 O4 A:DT11 3.4 206.9 1.0 N1 B:DA5 3.5 281.2 1.0 N6 B:DA3 3.9 209.5 1.0 N3 B:DT4 3.9 289.4 1.0 N6 B:DA5 4.0 262.7 1.0 C4 A:DT11 4.1 210.1 1.0 C6 B:DA5 4.1 259.7 1.0 C4 A:DT12 4.1 216.4 1.0 C5 B:DT4 4.3 256.1 1.0 C2 B:DA5 4.4 293.8 1.0 C6 B:DA3 4.4 211.9 1.0 C7 B:DT4 4.5 232.1 1.0 C7 A:DT11 4.7 242.0 1.0 C5 A:DT11 4.7 234.6 1.0 C5 B:DA3 4.8 212.6 1.0 N3 A:DT11 4.8 199.3 1.0 N7 B:DA3 4.9 210.9 1.0 N3 A:DT12 4.9 214.5 1.0 C7 A:DT12 5.0 213.4 1.0

S.Vecchioni, B.Lu, W.Livernois, Y.P.Ohayon, J.B.Yoder, C.F.Yang, K.Woloszyn, W.Bernfeld, M.P.Anantram, J.W.Canary, W.A.Hendrickson, L.J.Rothschild, C.Mao, S.J.Wind, N.C.Seeman, R.Sha. Metal-Mediated Dna Nanotechnology in 3D: Structural Library By Templated Diffraction. Adv Mater 01938 2023.
ISSN: ISSN 1521-4095
PubMed: 36939292
DOI: 10.1002/ADMA.202201938