Silver in PDB 8e4e: [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

Protein crystallography data

The structure of [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 8e4e was solved by S.Vecchioni, B.Lu, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.43 / 4.19
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 105.126, 105.126, 92.433, 90, 90, 120
R / Rfree (%) 22.2 / 23.8

Silver Binding Sites:

The binding sites of Silver atom in the [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 8e4e). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 8e4e:

Silver binding site 1 out of 1 in 8e4e

Go back to Silver Binding Sites List in 8e4e
Silver binding site 1 out of 1 in the [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [T:Ag+:T] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag101

b:150.0
occ:1.00
O4 B:DT4 2.1 259.2 1.0
O4 A:DT12 2.9 222.0 1.0
C4 B:DT4 3.2 266.7 1.0
O4 A:DT11 3.4 206.9 1.0
N1 B:DA5 3.5 281.2 1.0
N6 B:DA3 3.9 209.5 1.0
N3 B:DT4 3.9 289.4 1.0
N6 B:DA5 4.0 262.7 1.0
C4 A:DT11 4.1 210.1 1.0
C6 B:DA5 4.1 259.7 1.0
C4 A:DT12 4.1 216.4 1.0
C5 B:DT4 4.3 256.1 1.0
C2 B:DA5 4.4 293.8 1.0
C6 B:DA3 4.4 211.9 1.0
C7 B:DT4 4.5 232.1 1.0
C7 A:DT11 4.7 242.0 1.0
C5 A:DT11 4.7 234.6 1.0
C5 B:DA3 4.8 212.6 1.0
N3 A:DT11 4.8 199.3 1.0
N7 B:DA3 4.9 210.9 1.0
N3 A:DT12 4.9 214.5 1.0
C7 A:DT12 5.0 213.4 1.0

Reference:

S.Vecchioni, B.Lu, W.Livernois, Y.P.Ohayon, J.B.Yoder, C.F.Yang, K.Woloszyn, W.Bernfeld, M.P.Anantram, J.W.Canary, W.A.Hendrickson, L.J.Rothschild, C.Mao, S.J.Wind, N.C.Seeman, R.Sha. Metal-Mediated Dna Nanotechnology in 3D: Structural Library By Templated Diffraction. Adv Mater 01938 2023.
ISSN: ISSN 1521-4095
PubMed: 36939292
DOI: 10.1002/ADMA.202201938
Page generated: Tue Apr 11 12:17:33 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy