Silver in PDB 7tmj: Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide

The structure of Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide, PDB code: 7tmj was solved by A.I.Nguyen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.57 / 1.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	13.571, 13.921, 53.145, 90, 90, 90
R / Rfree (%)	17.1 / 18.7

The binding sites of Silver atom in the Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide (pdb code 7tmj). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 4 binding sites of Silver where determined in the Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide, PDB code: 7tmj:
Jump to Silver binding site number: 1; 2; 3; 4;

Silver binding site 1 out of 4 in the Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag103 b:14.3 occ:0.69 H181 A:I77101 1.0 9.3 0.3 H051 A:I77101 1.4 9.5 0.3 C18 A:I77101 2.0 7.8 0.3 C05 A:I77101 2.3 7.9 0.3 N07 A:I77101 2.4 6.5 0.5 N10 A:I77101 2.4 7.6 0.5 C09 A:I77101 2.6 6.2 0.3 C08 A:I77101 2.8 7.1 0.3 C17 A:I77101 3.1 7.0 0.3 H061 A:I77101 3.1 7.7 0.5 C06 A:I77101 3.2 6.4 0.5 C08 A:I77101 3.2 5.7 0.5 C09 A:I77101 3.3 5.8 0.5 C11 A:I77101 3.3 8.1 0.5 H111 A:I77101 3.3 9.7 0.5 H171 A:I77101 3.4 8.4 0.3 C04 A:I77101 3.5 7.8 0.3 H041 A:I77101 3.9 9.3 0.3 N10 A:I77101 3.9 5.2 0.3 N07 A:I77101 4.1 7.4 0.3 C12 A:I77101 4.3 5.4 0.3 C03 A:I77101 4.5 5.4 0.5 C05 A:I77101 4.5 5.8 0.5 C18 A:I77101 4.6 7.3 0.5 C11 A:I77101 4.6 5.8 0.3 C12 A:I77101 4.6 6.9 0.5 C03 A:I77101 4.7 8.5 0.3 C06 A:I77101 4.9 8.4 0.3

Silver binding site 2 out of 4 in the Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag103 b:10.7 occ:0.31 H181 A:I77101 0.9 8.8 0.5 H051 A:I77101 1.2 7.0 0.5 C18 A:I77101 1.9 7.3 0.5 C05 A:I77101 2.1 5.8 0.5 N07 A:I77101 2.2 7.4 0.3 O A:HOH207 2.4 34.0 1.0 N10 A:I77101 2.4 5.2 0.3 C09 A:I77101 2.6 5.8 0.5 C08 A:I77101 2.7 5.7 0.5 H061 A:I77101 2.9 10.1 0.3 C06 A:I77101 2.9 8.4 0.3 C17 A:I77101 3.1 7.0 0.5 C08 A:I77101 3.1 7.1 0.3 C09 A:I77101 3.2 6.2 0.3 C11 A:I77101 3.3 5.8 0.3 H111 A:I77101 3.3 6.9 0.3 C04 A:I77101 3.3 7.0 0.5 H171 A:I77101 3.4 8.4 0.5 H041 A:I77101 3.7 8.3 0.5 N10 A:I77101 3.9 7.6 0.5 N07 A:I77101 4.0 6.5 0.5 C12 A:I77101 4.2 6.9 0.5 C03 A:I77101 4.3 8.5 0.3 C05 A:I77101 4.4 7.9 0.3 C03 A:I77101 4.5 5.4 0.5 C18 A:I77101 4.6 7.8 0.3 C11 A:I77101 4.6 8.1 0.5 C12 A:I77101 4.6 5.4 0.3 C06 A:I77101 4.7 6.4 0.5 C04 A:I77101 4.9 7.8 0.3

Silver binding site 3 out of 4 in the Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag104 b:15.6 occ:0.60 H051 A:I6W102 0.9 19.3 0.3 H191 A:I6W102 1.2 22.2 0.3 C05 A:I6W102 1.8 16.1 0.3 C19 A:I6W102 2.1 18.5 0.3 N07 A:I6W102 2.2 13.9 0.7 N10 A:I6W102 2.3 15.1 0.7 C08 A:I6W102 2.5 16.9 0.3 C09 A:I6W102 2.6 18.3 0.3 C04 A:I6W102 3.0 16.6 0.3 C08 A:I6W102 3.0 12.8 0.7 C09 A:I6W102 3.0 13.5 0.7 C06 A:I6W102 3.1 14.0 0.7 H061 A:I6W102 3.1 16.8 0.7 C11 A:I6W102 3.2 14.9 0.7 H111 A:I6W102 3.3 17.9 0.7 H041 A:I6W102 3.3 19.9 0.3 C18 A:I6W102 3.4 18.1 0.3 H181 A:I6W102 3.7 21.7 0.3 N07 A:I6W102 3.8 16.9 0.3 N10 A:I6W102 3.9 16.0 0.3 C03 A:I6W102 4.2 15.1 0.3 C05 A:I6W102 4.3 15.1 0.7 C03 A:I6W102 4.4 13.1 0.7 C19 A:I6W102 4.4 17.4 0.7 C12 A:I6W102 4.5 15.3 0.7 C12 A:I6W102 4.5 19.5 0.3 C06 A:I6W102 4.5 16.9 0.3 C11 A:I6W102 4.7 18.5 0.3 O3 A:NO3106 4.7 53.9 1.0 C04 A:I6W102 4.9 13.6 0.7 C18 A:I6W102 5.0 17.2 0.7

Silver binding site 4 out of 4 in the Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Porous Framework Formed By Assembly of A Bipyridyl-Conjugated Helical Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag104 b:62.1 occ:0.40 H191 A:I6W102 0.9 20.9 0.7 H051 A:I6W102 1.5 18.1 0.7 C19 A:I6W102 1.9 17.4 0.7 N10 A:I6W102 2.3 16.0 0.3 C05 A:I6W102 2.4 15.1 0.7 N07 A:I6W102 2.7 16.9 0.3 C09 A:I6W102 2.8 13.5 0.7 H111 A:I6W102 2.9 22.2 0.3 C08 A:I6W102 3.0 12.8 0.7 C18 A:I6W102 3.0 17.2 0.7 C11 A:I6W102 3.0 18.5 0.3 H181 A:I6W102 3.2 20.7 0.7 C09 A:I6W102 3.3 18.3 0.3 C08 A:I6W102 3.4 16.9 0.3 C04 A:I6W102 3.6 13.6 0.7 C06 A:I6W102 3.7 16.9 0.3 H061 A:I6W102 3.7 20.3 0.3 H041 A:I6W102 3.9 16.3 0.7 N10 A:I6W102 4.1 15.1 0.7 C12 A:I6W102 4.2 15.3 0.7 N07 A:I6W102 4.3 13.9 0.7 C12 A:I6W102 4.4 19.5 0.3 C19 A:I6W102 4.5 18.5 0.3 C11 A:I6W102 4.7 14.9 0.7 C05 A:I6W102 4.8 16.1 0.3 C03 A:I6W102 4.8 13.1 0.7 C03 A:I6W102 4.9 15.1 0.3 C18 A:I6W102 5.0 18.1 0.3

S.L.Heinz-Kunert, A.Pandya, V.T.Dang, P.N.Tran, S.Ghosh, D.Mcelheny, B.D.Santarsiero, Z.Ren, A.I.Nguyen. Assembly of Pi-Stacking Helical Peptides Into A Porous and Multivariable Proteomimetic Framework. J.Am.Chem.Soc. V. 144 7001 2022.
ISSN: ESSN 1520-5126
PubMed: 35390261
DOI: 10.1021/JACS.2C02146