Silver in PDB 7sdv: [T:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [T:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdv was solved by S.Vecchioni, B.Lu, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.19 / 4.19
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.128, 105.128, 91.029, 90, 90, 120
R / Rfree (%)	23.7 / 32.2

The binding sites of Silver atom in the [T:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdv). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [T:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdv:

Silver binding site 1 out of 1 in the [T:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [T:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag101 b:111.2 occ:1.00 N4 B:5CM4 1.9 155.8 1.0 O4 A:DT12 2.1 193.8 1.0 N6 B:DA3 2.1 182.4 1.0 C4 B:5CM4 2.3 158.1 1.0 C5A B:5CM4 2.6 272.5 1.0 C5 B:5CM4 2.6 160.4 1.0 C6 B:DA3 2.9 181.1 1.0 C4 A:DT12 3.2 182.0 1.0 N3 B:5CM4 3.4 160.1 1.0 N1 B:DA3 3.5 181.8 1.0 C5 B:DA3 3.7 183.5 1.0 O4 A:DT11 3.7 217.5 1.0 C6 B:5CM4 3.9 166.0 1.0 N3 A:DT12 3.9 190.2 1.0 O4 A:DT13 4.0 184.9 1.0 N7 B:DA3 4.1 181.1 1.0 C4 A:DT11 4.3 192.8 1.0 C5 A:DT12 4.4 173.1 1.0 C2 B:5CM4 4.5 164.7 1.0 C2 B:DA3 4.6 183.7 1.0 C7 A:DT12 4.6 175.9 1.0 N1 B:5CM4 4.6 168.5 1.0 C4 A:DT13 4.7 183.5 1.0 N3 A:DT13 4.7 204.9 1.0 C4 B:DA3 4.7 187.4 1.0 N1 B:DA5 4.9 187.4 1.0 N3 A:DT11 4.9 181.4 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.