Silver in PDB 7sdu: [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdu was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.49 / 4.33
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.102, 105.102, 93.232, 90, 90, 120
R / Rfree (%)	29.6 / 32.3

The structure of [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice also contains other interesting chemical elements:

Iodine

(I)

1 atom

The binding sites of Silver atom in the [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdu). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdu:

Silver binding site 1 out of 1 in the [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [Iu:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag101 b:134.6 occ:1.00 N4 B:5CM4 2.0 227.2 1.0 N6 B:DA3 2.4 219.0 1.0 O4 A:5IU12 2.6 357.7 1.0 C6 B:DA3 3.0 216.4 1.0 C4 B:5CM4 3.2 223.9 1.0 C5 B:DA3 3.5 217.7 1.0 N7 B:DA3 3.6 221.6 1.0 N1 B:DA3 3.9 212.7 1.0 C4 A:5IU12 3.9 352.6 1.0 N3 B:5CM4 4.0 220.2 1.0 C5 B:5CM4 4.1 225.0 1.0 C5A B:5CM4 4.1 289.2 1.0 O4 A:DT13 4.3 340.4 1.0 N3 A:5IU12 4.5 347.1 1.0 O4 A:DT11 4.5 320.9 1.0 C4 B:DA3 4.6 214.9 1.0 C8 B:DA3 4.7 221.3 1.0 C2 B:DA3 4.9 210.4 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.