Silver in PDB 7sdn: [C:Ag+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [C:Ag+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdn was solved by S.Vecchioni, B.Lu, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.86 / 4.32
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	107.272, 107.272, 92.998, 90, 90, 120
R / Rfree (%)	16.9 / 19.1

The binding sites of Silver atom in the [C:Ag+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdn). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [C:Ag+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdn:

Silver binding site 1 out of 1 in the [C:Ag+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [C:Ag+:U] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag101 b:279.3 occ:0.75 N4 A:DC12 2.0 305.3 1.0 O2 B:DU4 2.1 267.0 1.0 N3 B:DU4 2.4 260.8 1.0 C2 B:DU4 2.6 267.1 1.0 N3 A:DC12 2.8 292.1 1.0 C4 A:DC12 2.8 294.1 1.0 N6 B:DA3 3.2 252.1 1.0 O4 A:DT13 3.4 324.9 1.0 C4 A:DT13 3.8 322.3 1.0 C4 B:DU4 3.8 248.0 1.0 C6 B:DA3 3.8 259.1 1.0 N1 B:DA5 3.9 270.7 1.0 N3 A:DT13 3.9 328.1 1.0 N1 B:DU4 4.0 270.9 1.0 C2 A:DC12 4.1 281.8 1.0 N1 B:DA3 4.1 266.5 1.0 C2 B:DA5 4.1 271.3 1.0 N3 A:DT11 4.1 278.8 1.0 C5 A:DC12 4.2 286.0 1.0 O4 A:DT11 4.2 288.8 1.0 O4 B:DU4 4.3 235.7 1.0 C4 A:DT11 4.4 285.2 1.0 C6 B:DA5 4.5 272.8 1.0 O2 A:DC12 4.7 278.9 1.0 C5 A:DT13 4.7 310.1 1.0 C5 B:DA3 4.8 257.9 1.0 N6 B:DA5 4.9 268.5 1.0 C2 A:DT13 4.9 320.6 1.0 C1' B:DU4 4.9 275.4 1.0 C2 A:DT11 4.9 266.7 1.0 N3 B:DA5 4.9 272.4 1.0 C5 B:DU4 4.9 255.3 1.0 C6 B:DU4 5.0 269.6 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.