Silver in PDB 7sdm: [U:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [U:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdm was solved by S.Vecchioni, B.Lu, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.28 / 4.01
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.083, 106.083, 94.123, 90, 90, 120
R / Rfree (%)	21.5 / 23.9

The binding sites of Silver atom in the [U:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdm). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [U:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdm:

Silver binding site 1 out of 1 in the [U:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [U:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag101 b:206.9 occ:1.00 N3 B:IMC4 2.1 246.0 1.0 N3 A:DU12 2.1 274.6 1.0 O4 A:DU12 2.3 275.4 1.0 C4 A:DU12 2.5 268.0 1.0 C2 B:IMC4 2.9 259.5 1.0 N2 B:IMC4 2.9 266.8 1.0 C4 B:IMC4 3.0 236.7 1.0 N1 B:DA5 3.2 253.4 1.0 O4 B:IMC4 3.3 218.8 1.0 C2 A:DU12 3.4 262.8 1.0 C6 B:DA5 3.5 265.5 1.0 N6 B:DA3 3.6 223.4 1.0 N1 B:DA3 3.6 250.1 1.0 C6 B:DA3 3.7 240.6 1.0 C2 B:DA5 3.7 251.7 1.0 N6 B:DA5 3.8 260.2 1.0 O2 A:DU12 3.9 267.3 1.0 C5 A:DU12 4.0 249.3 1.0 N1 B:IMC4 4.1 262.9 1.0 O4 A:DT11 4.2 297.8 1.0 N3 A:DT11 4.2 282.6 1.0 C5 B:DA5 4.2 276.4 1.0 O4 A:DT13 4.3 255.8 1.0 C5 B:IMC4 4.3 241.8 1.0 N3 A:DT13 4.3 268.1 1.0 C2 B:DA3 4.3 264.6 1.0 C4 A:DT11 4.4 286.4 1.0 N3 B:DA5 4.4 260.8 1.0 C4 A:DT13 4.5 255.1 1.0 C5 B:DA3 4.5 247.4 1.0 C4 B:DA5 4.6 274.4 1.0 N1 A:DU12 4.6 243.8 1.0 C6 B:IMC4 4.7 254.8 1.0 C6 A:DU12 4.8 239.1 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.