Silver in PDB 7sdk: [Mc:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [Mc:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdk was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.55 / 3.86
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	105.861, 105.861, 92.448, 90, 90, 120
R / Rfree (%)	19.2 / 21.4

The binding sites of Silver atom in the [Mc:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdk). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [Mc:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdk:

Silver binding site 1 out of 1 in the [Mc:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [Mc:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag101 b:129.9 occ:0.50 N3 B:IMC4 2.0 234.4 1.0 N3 A:5CM12 2.3 289.0 1.0 N4 A:5CM12 2.3 307.1 1.0 C4 A:5CM12 2.6 285.8 1.0 N1 B:DA3 2.8 250.9 1.0 C4 B:IMC4 2.8 231.9 1.0 C2 B:IMC4 2.9 238.1 1.0 O4 B:IMC4 3.0 226.1 1.0 N1 B:DA5 3.0 241.8 1.0 N2 B:IMC4 3.1 238.9 1.0 C6 B:DA3 3.1 247.3 1.0 C6 B:DA5 3.2 244.9 1.0 C2 B:DA3 3.3 256.1 1.0 C2 B:DA5 3.4 242.8 1.0 N6 B:DA3 3.5 237.9 1.0 C2 A:5CM12 3.5 275.8 1.0 N3 A:DT13 3.6 274.7 1.0 N6 B:DA5 3.7 242.8 1.0 C5 B:DA5 3.8 248.8 1.0 O2 A:5CM12 3.8 279.9 1.0 C5 B:DA3 3.9 249.7 1.0 N3 B:DA5 3.9 242.2 1.0 C5 A:5CM12 4.0 266.9 1.0 C4 B:DA5 4.1 247.7 1.0 N3 B:DA3 4.1 258.0 1.0 N1 B:IMC4 4.1 239.2 1.0 C4 A:DT13 4.1 258.0 1.0 O4 A:DT13 4.1 260.2 1.0 C5 B:IMC4 4.2 233.4 1.0 C2 A:DT13 4.2 275.1 1.0 C4 B:DA3 4.3 254.7 1.0 O2 A:DT13 4.4 306.5 1.0 N1 A:5CM12 4.6 255.8 1.0 C6 B:IMC4 4.7 237.1 1.0 N7 B:DA5 4.8 251.8 1.0 C6 A:5CM12 4.8 252.2 1.0 C5A A:5CM12 4.9 298.5 1.0 N7 B:DA3 4.9 246.6 1.0 N3 A:DT11 5.0 292.5 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.