Silver in PDB 7sdj: [Mc:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [Mc:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdj was solved by B.Lu, S.Vecchioni, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.29 / 4.00
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	104.966, 104.966, 91.745, 90, 90, 120
R / Rfree (%)	27.7 / 30.3

The binding sites of Silver atom in the [Mc:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdj). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [Mc:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdj:

Silver binding site 1 out of 1 in the [Mc:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [Mc:Ag+:Mc] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag101 b:20.3 occ:0.71 N4 B:5CM4 2.0 144.1 1.0 N4 A:5CM12 2.0 204.8 1.0 N3 B:5CM4 2.2 139.3 1.0 C4 B:5CM4 2.3 143.9 1.0 N6 B:DA3 3.0 119.6 1.0 C6 B:DA3 3.0 119.2 1.0 C4 A:5CM12 3.2 183.0 1.0 O4 A:DT11 3.3 247.1 1.0 C2 B:5CM4 3.4 139.6 1.0 N1 B:DA3 3.4 114.5 1.0 N1 B:DA5 3.4 235.8 1.0 C5 B:DA3 3.5 124.0 1.0 N3 A:5CM12 3.7 183.4 1.0 C5 B:5CM4 3.7 148.9 1.0 C4 A:DT11 3.8 224.7 1.0 O2 B:5CM4 3.9 135.6 1.0 C2 B:DA5 3.9 236.6 1.0 N3 A:DT11 4.0 206.1 1.0 C6 B:DA5 4.0 227.7 1.0 N7 B:DA3 4.1 129.4 1.0 C2 B:DA3 4.2 114.8 1.0 N6 B:DA5 4.3 235.5 1.0 C4 B:DA3 4.3 123.7 1.0 C5 A:5CM12 4.4 160.2 1.0 N1 B:5CM4 4.4 144.7 1.0 O4 A:DT13 4.5 219.9 1.0 C6 B:5CM4 4.6 149.3 1.0 N3 B:DA3 4.6 119.5 1.0 C5A B:5CM4 4.7 378.0 1.0 C5A A:5CM12 4.7 388.0 1.0 N3 A:DT13 4.7 223.9 1.0 N3 B:DA5 4.8 205.9 1.0 C5 A:DT11 4.9 224.5 1.0 C4 A:DT13 4.9 210.0 1.0 C5 B:DA5 5.0 220.3 1.0 C2 A:5CM12 5.0 162.0 1.0 C8 B:DA3 5.0 132.0 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.