Silver in PDB 7sdf: [C:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice

The structure of [C:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdf was solved by S.Vecchioni, B.Lu, N.C.Seeman, R.Sha, Y.P.Ohayon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.63 / 3.46
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	106.173, 106.173, 92.653, 90, 90, 120
R / Rfree (%)	17.2 / 21.9

The binding sites of Silver atom in the [C:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice (pdb code 7sdf). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the [C:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice, PDB code: 7sdf:

Silver binding site 1 out of 1 in the [C:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of [C:Ag+:S] Metal-Mediated Dna Base Pair in A Self-Assembling Rhombohedral Lattice within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag101 b:175.3 occ:1.00 N3 B:IMC4 1.8 157.9 1.0 N3 A:DC12 2.0 193.0 1.0 C4 B:IMC4 2.6 157.1 1.0 N4 A:DC12 2.7 196.3 1.0 C4 A:DC12 2.7 193.9 1.0 C2 B:IMC4 2.7 163.3 1.0 HN21 B:IMC4 2.8 146.5 1.0 O4 B:IMC4 2.8 154.8 1.0 N2 B:IMC4 3.0 164.0 1.0 C2 A:DC12 3.1 190.8 1.0 N1 B:DA5 3.3 162.3 1.0 N1 B:DA3 3.4 175.0 1.0 O2 A:DC12 3.4 194.0 1.0 C6 B:DA5 3.6 170.0 1.0 C6 B:DA3 3.8 175.7 1.0 C2 B:DA5 3.8 167.3 1.0 HN22 B:IMC4 3.8 146.5 1.0 N6 B:DA5 3.9 175.2 1.0 C2 B:DA3 3.9 181.1 1.0 C5 B:IMC4 3.9 164.2 1.0 N6 B:DA3 4.0 171.9 1.0 N1 B:IMC4 4.0 172.8 1.0 N3 A:DT13 4.1 191.2 1.0 C5 A:DC12 4.1 192.7 1.0 C5 B:DA5 4.3 174.4 1.0 N1 A:DC12 4.3 189.5 1.0 C4 A:DT13 4.4 190.6 1.0 O4 A:DT13 4.4 192.3 1.0 N3 B:DA5 4.4 175.0 1.0 C6 B:IMC4 4.4 171.4 1.0 C5 B:DA3 4.6 180.7 1.0 C4 B:DA5 4.6 172.8 1.0 N3 A:DT11 4.6 196.4 1.0 O4 A:DT11 4.6 202.7 1.0 C2 A:DT13 4.6 189.8 1.0 N3 B:DA3 4.7 187.6 1.0 C6 A:DC12 4.7 190.4 1.0 C4 A:DT11 4.9 198.9 1.0 C4 B:DA3 4.9 185.9 1.0 O2 A:DT13 4.9 192.4 1.0

S.Vecchioni, B.Lu, R.Sha, Y.P.Ohayon, J.Yoder, K.Woloszyn, W.Bernfeld, W.Hendrickson, L.Rothschild, C.Mao, S.Wind, N.C.Seeman. Metal-Mediated Dna Nanotechnology in 3D: Reengineering the Semantomorphic Alphabet To Be Published.