Silver in PDB 7edn: Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I)

The structure of Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I), PDB code: 7edn was solved by J.Kondo, C.Suzuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.84 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	51.176, 28.102, 37.711, 90, 102.35, 90
R / Rfree (%)	18.8 / 25.2

The structure of Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I) also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Silver atom in the Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I) (pdb code 7edn). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 2 binding sites of Silver where determined in the Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I), PDB code: 7edn:
Jump to Silver binding site number: 1; 2;

Silver binding site 1 out of 2 in the Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag101 b:69.9 occ:1.00 N1 A:A17 2.1 47.6 1.0 C2 A:A17 2.8 46.5 1.0 C6 A:G19 3.3 61.1 1.0 C6 A:A17 3.3 43.0 1.0 N1 A:G19 3.5 61.2 1.0 O6 A:G19 3.5 59.7 1.0 N6 A:A17 3.6 46.4 1.0 C5 A:G19 3.7 61.9 1.0 C2 A:G19 4.0 67.0 1.0 N3 A:A17 4.1 51.1 1.0 C4 A:G19 4.2 69.1 1.0 N1 A:G16 4.2 46.9 1.0 N7 A:G19 4.3 64.7 1.0 N3 A:G19 4.4 76.7 1.0 N2 A:G16 4.4 48.5 1.0 C5 A:A17 4.5 51.3 1.0 C4 A:A17 4.7 56.2 1.0 C2 A:G16 4.7 50.0 1.0 N2 A:G19 4.8 72.4 1.0 O6 A:G16 5.0 45.3 1.0 C6 A:G16 5.0 43.5 1.0

Silver binding site 2 out of 2 in the Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag102 b:104.9 occ:1.00 N3 A:U6 2.0 72.2 1.0 C2 A:U6 2.7 78.6 1.0 O2 A:U6 2.7 71.4 1.0 C4 A:U6 3.0 68.1 1.0 O4 A:U6 3.2 69.3 1.0 N3 A:C7 3.5 57.8 1.0 C4 A:C7 3.6 59.1 1.0 N4 A:C7 3.7 60.2 1.0 N1 A:G5 3.7 76.6 1.0 O6 A:G5 3.8 73.8 1.0 C6 A:G5 3.9 74.4 1.0 N1 A:U6 4.0 86.5 1.0 C2 A:C7 4.1 69.3 1.0 C5 A:C7 4.2 67.7 1.0 C5 A:U6 4.3 73.7 1.0 C2 A:G5 4.5 82.6 1.0 C6 A:U6 4.6 82.7 1.0 N1 A:C7 4.7 70.6 1.0 O2 A:C7 4.7 73.1 1.0 C6 A:C7 4.7 70.5 1.0 N2 A:G5 4.8 83.1 1.0 C5 A:G5 4.8 75.2 1.0

J.Kondo, C.Suzuki. Crystal Structure of the Eukaryotic Decoding Site in Complex with Ag(I) To Be Published.