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Silver in PDB 7bsh: Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)

Protein crystallography data

The structure of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant), PDB code: 7bsh was solved by J.Kondo, C.Cerretani, T.Vosch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.71 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 28.223, 35.960, 43.482, 90.00, 90.00, 90.00
R / Rfree (%) 7.7 / 8.8

Silver Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Silver atom in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) (pdb code 7bsh). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 18 binding sites of Silver where determined in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant), PDB code: 7bsh:
Jump to Silver binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Silver binding site 1 out of 18 in 7bsh

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Silver binding site 1 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag101

b:10.7
occ:1.00
N3 A:DC3 2.3 10.9 1.0
O2 A:DC1 2.4 12.1 1.0
N1 B:DA2 2.5 11.3 1.0
AG A:AG105 2.7 10.5 1.0
AG A:AG110 2.8 10.1 1.0
AG B:AG101 2.8 10.9 1.0
O2 A:DC3 2.9 12.4 1.0
AG A:AG102 2.9 9.9 1.0
C2 A:DC3 3.0 12.7 1.0
H61 B:DA2 3.1 15.0 1.0
H2 B:DA2 3.1 14.9 1.0
H42 A:DC3 3.1 14.5 1.0
C2 B:DA2 3.2 12.4 1.0
C4 A:DC3 3.4 11.6 1.0
C6 B:DA2 3.4 11.9 1.0
C2 A:DC1 3.4 11.2 1.0
N6 B:DA2 3.6 12.5 1.0
N4 A:DC3 3.6 12.1 1.0
N3 A:DC1 3.7 10.5 1.0
O6 A:DG9 3.8 11.3 1.0
H2' A:DA2 4.0 16.4 1.0
N3 A:DC4 4.0 10.1 1.0
AG B:AG102 4.0 10.0 1.0
H42 A:DC4 4.2 13.8 1.0
O2 B:DC1 4.2 11.8 1.0
N1 A:DC3 4.3 12.2 1.0
O2 B:DC3 4.3 13.1 1.0
H1' A:DC1 4.4 17.6 1.0
H62 B:DA2 4.4 15.0 1.0
N3 B:DC1 4.4 10.7 1.0
H41 A:DC3 4.4 14.5 1.0
C6 A:DG9 4.5 11.1 1.0
O2 A:DC4 4.5 9.8 1.0
N3 B:DA2 4.5 12.6 1.0
C2 A:DC4 4.6 9.8 1.0
C5 A:DC3 4.6 12.1 1.0
C5 B:DA2 4.7 12.8 1.0
N1 A:DC1 4.7 12.3 1.0
C2 B:DC1 4.7 11.3 1.0
N4 A:DC4 4.7 11.5 1.0
N3 B:DC3 4.8 12.2 1.0
C4 A:DC4 4.8 10.7 1.0
H2'' A:DA2 4.8 16.4 1.0
C2' A:DA2 4.8 13.7 1.0
H8 A:DA2 4.9 18.9 1.0
C6 A:DC3 5.0 12.5 1.0
C2 B:DC3 5.0 12.4 1.0

Silver binding site 2 out of 18 in 7bsh

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Silver binding site 2 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag102

b:9.9
occ:1.00
O6 A:DG9 2.3 11.3 1.0
N3 A:DC4 2.4 10.1 1.0
AG A:AG110 2.7 10.1 1.0
AG B:AG102 2.8 10.0 1.0
AG A:AG106 2.8 10.1 1.0
AG A:AG105 2.9 10.5 1.0
AG A:AG101 2.9 10.7 1.0
AG A:AG103 3.0 10.1 1.0
H42 A:DC4 3.0 13.8 1.0
AG A:AG111 3.1 10.2 1.0
O2 A:DC4 3.1 9.8 1.0
C2 A:DC4 3.2 9.8 1.0
C6 A:DG9 3.3 11.1 1.0
C4 A:DC4 3.4 10.7 1.0
N4 A:DC4 3.5 11.5 1.0
N1 A:DG9 3.7 11.0 1.0
N3 A:DC3 3.8 10.9 1.0
AG B:AG101 3.9 10.9 1.0
AG B:AG103 4.1 9.9 1.0
N3 A:DC8 4.2 11.6 1.0
O2 A:DC1 4.2 12.1 1.0
C2 A:DC3 4.3 12.7 1.0
O2 A:DC3 4.3 12.4 1.0
H42 A:DC3 4.3 14.5 1.0
O2 B:DC4 4.3 10.8 1.0
H41 A:DC4 4.4 13.8 1.0
C4 A:DC3 4.5 11.6 1.0
N1 A:DC4 4.5 10.4 1.0
N3 A:DC1 4.5 10.5 1.0
C5 A:DG9 4.6 11.4 1.0
C2 A:DC8 4.6 12.0 1.0
N4 A:DC3 4.6 12.1 1.0
O2 A:DC8 4.6 11.6 1.0
H42 A:DC8 4.6 14.0 1.0
O6 B:DG9 4.7 10.9 1.0
C5 A:DC4 4.7 11.2 1.0
N1 B:DG9 4.7 10.6 1.0
C4 A:DC8 4.7 10.9 1.0
C2 A:DC1 4.8 11.2 1.0
H42 B:DC1 4.8 14.2 1.0
N3 B:DC4 4.8 10.4 1.0
AG A:AG109 4.9 12.2 0.3
N4 A:DC8 4.9 11.6 1.0
N3 B:DC1 5.0 10.7 1.0

Silver binding site 3 out of 18 in 7bsh

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Silver binding site 3 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag103

b:10.1
occ:1.00
N3 A:DC8 2.2 11.6 1.0
AG A:AG111 2.7 10.2 1.0
AG B:AG103 2.8 9.9 1.0
AG A:AG106 2.8 10.1 1.0
AG A:AG107 2.9 10.3 1.0
AG B:AG105 2.9 10.1 1.0
H42 A:DC8 2.9 14.0 1.0
C2 A:DC8 3.0 12.0 1.0
AG A:AG102 3.0 9.9 1.0
O2 A:DC8 3.0 11.6 1.0
AG A:AG109 3.1 12.2 0.3
AG A:AG104 3.1 9.9 1.0
C4 A:DC8 3.2 10.9 1.0
N4 A:DC8 3.4 11.6 1.0
N3 A:DC4 3.7 10.1 1.0
O6 A:DG9 3.8 11.3 1.0
AG B:AG102 3.9 10.0 1.0
C2 A:DC4 4.0 9.8 1.0
O2 A:DC4 4.0 9.8 1.0
H41 A:DC8 4.2 14.0 1.0
N1 A:DC8 4.3 11.6 1.0
C4 A:DC4 4.4 10.7 1.0
AG B:AG106 4.4 12.3 0.3
N1 A:DG9 4.4 11.0 1.0
H42 A:DC4 4.5 13.8 1.0
C5 A:DC8 4.5 11.2 1.0
AG B:AG104 4.5 10.1 1.0
C6 A:DG9 4.5 11.1 1.0
N7 A:DG7 4.5 9.3 1.0
OP1 A:DA6 4.5 10.5 1.0
O2 B:DC8 4.6 10.2 1.0
H22 B:DG9 4.7 14.0 1.0
N4 A:DC4 4.7 11.5 1.0
N3 B:DC8 4.8 10.1 1.0
AG A:AG110 4.8 10.1 1.0
C6 A:DC8 4.9 11.7 1.0
N1 A:DC4 4.9 10.4 1.0
N1 B:DG9 4.9 10.6 1.0

Silver binding site 4 out of 18 in 7bsh

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Silver binding site 4 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag104

b:9.9
occ:1.00
N7 A:DG7 2.3 9.3 1.0
OP1 A:DA6 2.4 10.5 1.0
AG A:AG107 2.7 10.3 1.0
AG A:AG108 2.8 11.1 1.0
AG A:AG112 2.8 10.7 1.0
AG B:AG105 2.8 10.1 1.0
N3 A:DC8 3.0 11.6 1.0
AG A:AG103 3.1 10.1 1.0
C8 A:DG7 3.3 9.6 1.0
P A:DA6 3.3 10.7 1.0
H8 A:DG7 3.3 11.6 1.0
C5 A:DG7 3.4 10.7 1.0
OP2 A:DA6 3.5 11.5 1.0
C2 A:DC8 3.5 12.0 1.0
O2 A:DC8 3.6 11.6 1.0
H42 A:DC8 3.6 14.0 1.0
H8 A:DA6 3.7 15.8 1.0
AG B:AG104 3.7 10.1 1.0
O6 A:DG7 3.7 12.2 1.0
C4 A:DC8 3.7 10.9 1.0
AG A:AG109 3.8 12.2 0.3
N4 A:DC8 3.9 11.6 1.0
C6 A:DG7 3.9 12.0 1.0
N7 A:DA6 3.9 12.4 1.0
C8 A:DA6 4.0 13.1 1.0
O5' A:DA6 4.1 11.7 1.0
AG B:AG103 4.4 9.9 1.0
N9 A:DG7 4.5 10.4 1.0
H2'' A:3DR5 4.5 18.8 1.0
O6 B:DG7 4.5 11.5 1.0
C4 A:DG7 4.6 11.4 1.0
N1 A:DC8 4.6 11.6 1.0
O A:HOH209 4.6 13.4 1.0
H41 A:DC8 4.6 14.0 1.0
H3' A:3DR5 4.7 16.1 1.0
O3' A:3DR5 4.7 12.1 1.0
C5 A:DC8 4.8 11.2 1.0
N7 B:DA6 4.9 11.7 1.0

Silver binding site 5 out of 18 in 7bsh

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Silver binding site 5 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 5 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag105

b:10.5
occ:1.00
N3 A:DC1 2.3 10.5 1.0
O2 B:DC4 2.5 10.8 1.0
O2 B:DC3 2.7 13.1 1.0
AG A:AG101 2.7 10.7 1.0
AG B:AG101 2.8 10.9 1.0
AG B:AG102 2.8 10.0 1.0
H42 A:DC1 2.9 17.3 1.0
AG A:AG102 2.9 9.9 1.0
C2 A:DC1 3.1 11.2 1.0
O2 A:DC1 3.1 12.1 1.0
AG A:AG106 3.2 10.1 1.0
C2 B:DC4 3.3 10.9 1.0
C4 A:DC1 3.3 12.1 1.0
H2 B:DA2 3.3 14.9 1.0
N1 A:DG9 3.3 11.0 1.0
N4 A:DC1 3.4 14.4 1.0
N3 B:DC4 3.4 10.4 1.0
O6 A:DG9 3.4 11.3 1.0
C6 A:DG9 3.5 11.1 1.0
C2 B:DC3 3.6 12.4 1.0
N3 B:DC3 3.9 12.2 1.0
C2 B:DA2 3.9 12.4 1.0
AG A:AG110 3.9 10.1 1.0
N1 B:DA2 4.0 11.3 1.0
C2 A:DG9 4.2 12.3 1.0
H41 A:DC1 4.2 17.3 1.0
H22 A:DG9 4.4 15.4 1.0
N1 A:DC1 4.4 12.3 1.0
C5 A:DG9 4.5 11.4 1.0
N1 B:DC4 4.5 12.6 1.0
H42 A:DC3 4.5 14.5 1.0
N2 A:DG9 4.6 12.8 1.0
H1' B:DC4 4.6 16.2 1.0
C5 A:DC1 4.6 13.1 1.0
H1' B:DC3 4.6 19.5 1.0
C4 B:DC4 4.6 11.9 1.0
N3 A:DC3 4.8 10.9 1.0
N1 B:DC3 4.8 13.8 1.0
N3 B:DA2 4.9 12.6 1.0
H42 A:DC4 4.9 13.8 1.0
AG B:AG103 4.9 9.9 1.0
O6 B:DG9 4.9 10.9 1.0
H42 B:DC4 5.0 15.1 1.0
N3 A:DG9 5.0 12.7 1.0

Silver binding site 6 out of 18 in 7bsh

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Silver binding site 6 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 6 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag106

b:10.1
occ:1.00
N1 A:DG9 2.3 11.0 1.0
O2 B:DC4 2.6 10.8 1.0
AG B:AG103 2.7 9.9 1.0
H22 A:DG9 2.8 15.4 1.0
AG B:AG106 2.8 12.3 0.3
AG A:AG103 2.8 10.1 1.0
AG A:AG102 2.8 9.9 1.0
AG B:AG102 2.9 10.0 1.0
O6 A:DG9 3.1 11.3 1.0
C6 A:DG9 3.1 11.1 1.0
AG A:AG105 3.2 10.5 1.0
O2 A:DC8 3.2 11.6 1.0
AG A:AG107 3.2 10.3 1.0
C2 A:DG9 3.2 12.3 1.0
N2 A:DG9 3.3 12.8 1.0
C2 B:DC4 3.4 10.9 1.0
N3 B:DC4 3.8 10.4 1.0
C2 A:DC8 3.9 12.0 1.0
H42 A:DC1 4.0 17.3 1.0
AG A:AG111 4.0 10.2 1.0
N3 A:DC8 4.1 11.6 1.0
H21 A:DG9 4.1 15.4 1.0
H42 B:DC8 4.1 12.8 1.0
H1' B:DC4 4.2 16.2 1.0
C5 A:DG9 4.4 11.4 1.0
N3 A:DG9 4.5 12.7 1.0
N3 A:DC1 4.5 10.5 1.0
N1 B:DC4 4.5 12.6 1.0
N4 A:DC1 4.6 14.4 1.0
H42 A:DC4 4.7 13.8 1.0
N3 B:DC8 4.7 10.1 1.0
N3 A:DC4 4.9 10.1 1.0
C4 A:DG9 4.9 11.5 1.0
C1' B:DC4 4.9 13.5 1.0
N4 B:DC8 4.9 10.6 1.0
AG B:AG105 4.9 10.1 1.0
AG A:AG110 5.0 10.1 1.0
C4 A:DC1 5.0 12.1 1.0

Silver binding site 7 out of 18 in 7bsh

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Silver binding site 7 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 7 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag107

b:10.3
occ:1.00
AG B:AG106 2.6 12.3 0.3
O6 A:DG7 2.6 12.2 1.0
O2 A:DC8 2.7 11.6 1.0
AG A:AG104 2.7 9.9 1.0
AG A:AG108 2.8 11.1 1.0
AG B:AG104 2.8 10.1 1.0
AG B:AG103 2.8 9.9 1.0
AG A:AG103 2.9 10.1 1.0
AG A:AG106 3.2 10.1 1.0
AG B:AG105 3.4 10.1 1.0
C6 A:DG7 3.5 12.0 1.0
C2 A:DC8 3.5 12.0 1.0
N3 A:DC8 3.7 11.6 1.0
N7 A:DG7 3.7 9.3 1.0
OP1 B:DA6 3.8 10.2 1.0
C5 A:DG7 3.9 10.7 1.0
H42 B:DC8 4.1 12.8 1.0
H2'' B:3DR5 4.1 22.1 1.0
AG A:AG112 4.2 10.7 1.0
H22 A:DG9 4.2 15.4 1.0
OP2 B:DA6 4.3 12.5 1.0
P B:DA6 4.4 12.1 1.0
N3 B:DC8 4.4 10.1 1.0
H62 A:DA6 4.6 19.6 1.0
O3' B:3DR5 4.7 14.7 1.0
N1 A:DG7 4.7 13.8 1.0
N1 A:DG9 4.7 11.0 1.0
H1' A:DC8 4.7 15.8 1.0
N7 A:DA6 4.8 12.4 1.0
N1 A:DC8 4.8 11.6 1.0
AG A:AG111 4.8 10.2 1.0
N4 B:DC8 4.8 10.6 1.0
H1 A:DG7 4.9 16.5 1.0
N2 A:DG9 4.9 12.8 1.0
H3' B:3DR5 4.9 19.2 1.0
C8 A:DG7 4.9 9.6 1.0
C4 A:DC8 4.9 10.9 1.0

Silver binding site 8 out of 18 in 7bsh

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Silver binding site 8 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 8 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag108

b:11.1
occ:1.00
N7 A:DA6 2.2 12.4 1.0
OP2 B:DA6 2.3 12.5 1.0
O6 A:DG7 2.5 12.2 1.0
AG B:AG104 2.8 10.1 1.0
AG A:AG112 2.8 10.7 1.0
AG A:AG104 2.8 9.9 1.0
AG A:AG107 2.8 10.3 1.0
H62 A:DA6 2.9 19.6 1.0
H8 B:DA6 3.0 14.4 1.0
C8 A:DA6 3.2 13.1 1.0
C6 A:DG7 3.2 12.0 1.0
H8 A:DA6 3.3 15.8 1.0
C5 A:DA6 3.3 12.8 1.0
P B:DA6 3.3 12.1 1.0
N7 A:DG7 3.5 9.3 1.0
N6 A:DA6 3.6 16.4 1.0
C5 A:DG7 3.6 10.7 1.0
OP1 B:DA6 3.6 10.2 1.0
C8 B:DA6 3.7 12.0 1.0
N7 B:DA6 3.7 11.7 1.0
C6 A:DA6 3.9 14.4 1.0
O3' B:3DR5 4.1 14.7 1.0
AG B:AG105 4.1 10.1 1.0
H61 A:DA6 4.3 19.6 1.0
N1 A:DG7 4.4 13.8 1.0
N9 A:DA6 4.4 13.4 1.0
OP2 A:DA6 4.4 11.5 1.0
C4 A:DA6 4.5 14.6 1.0
H1 A:DG7 4.6 16.5 1.0
N7 B:DG7 4.6 9.3 1.0
OP1 A:DA6 4.7 10.5 1.0
C8 A:DG7 4.7 9.6 1.0
O5' B:DA6 4.7 12.8 1.0
AG B:AG106 4.7 12.3 0.3
O2 A:DC8 4.7 11.6 1.0
H2'' B:3DR5 4.8 22.1 1.0
C4 A:DG7 4.9 11.4 1.0
H5' B:DA6 4.9 16.0 1.0
P A:DA6 5.0 10.7 1.0
O6 B:DG7 5.0 11.5 1.0
AG B:AG103 5.0 9.9 1.0
N9 B:DA6 5.0 12.6 1.0

Silver binding site 9 out of 18 in 7bsh

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Silver binding site 9 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 9 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag109

b:12.2
occ:0.35
H42 A:DC8 2.4 14.0 1.0
H22 B:DG9 2.4 14.0 1.0
AG B:AG105 2.6 10.1 1.0
AG A:AG111 2.8 10.2 1.0
AG A:AG103 3.1 10.1 1.0
N2 B:DG9 3.2 11.7 1.0
N4 A:DC8 3.3 11.6 1.0
H2' A:3DR5 3.3 18.8 1.0
H2'' A:3DR5 3.3 18.8 1.0
H3' A:3DR5 3.4 16.1 1.0
H1' A:DC4 3.4 13.9 1.0
O2 A:DC4 3.4 9.8 1.0
H2'' A:DC4 3.5 14.1 1.0
H2' A:DC4 3.6 14.1 1.0
C2' A:3DR5 3.7 15.7 1.0
OP1 A:DA6 3.7 10.5 1.0
H21 B:DG9 3.7 14.0 1.0
C2 A:DC4 3.7 9.8 1.0
H41 A:DC8 3.7 14.0 1.0
C2' A:DC4 3.8 11.7 1.0
AG A:AG104 3.8 9.9 1.0
C1' A:DC4 3.8 11.6 1.0
N1 A:DC4 3.9 10.4 1.0
O2 B:DC8 4.0 10.2 1.0
H61 B:DA10 4.0 27.1 1.0
C3' A:3DR5 4.0 13.4 1.0
N1 B:DG9 4.0 10.6 1.0
N3 A:DC8 4.0 11.6 1.0
C2 B:DG9 4.1 10.4 1.0
C4 A:DC8 4.1 10.9 1.0
O6 B:DG7 4.2 11.5 1.0
N3 A:DC4 4.4 10.1 1.0
AG B:AG103 4.4 9.9 1.0
H62 B:DA10 4.4 27.1 1.0
P A:DA6 4.5 10.7 1.0
N6 B:DA10 4.6 22.6 1.0
AG A:AG112 4.6 10.7 1.0
O3' A:3DR5 4.8 12.1 1.0
OP2 A:DA6 4.8 11.5 1.0
C6 A:DC4 4.8 11.4 1.0
AG A:AG102 4.9 9.9 1.0
H42 B:DC1 4.9 14.2 1.0
H5' A:3DR5 4.9 18.4 1.0

Silver binding site 10 out of 18 in 7bsh

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Silver binding site 10 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 10 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (Abasic Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag110

b:10.1
occ:1.00
N3 B:DC1 2.3 10.7 1.0
O2 A:DC4 2.5 9.8 1.0
AG A:AG102 2.7 9.9 1.0
AG B:AG101 2.7 10.9 1.0
O2 A:DC3 2.7 12.4 1.0
AG A:AG101 2.8 10.7 1.0
H42 B:DC1 2.9 14.2 1.0
AG B:AG102 3.0 10.0 1.0
O2 B:DC1 3.0 11.8 1.0
C2 B:DC1 3.0 11.3 1.0
AG A:AG111 3.1 10.2 1.0
N1 B:DG9 3.3 10.6 1.0
C4 B:DC1 3.3 11.1 1.0
C2 A:DC4 3.3 9.8 1.0
N4 B:DC1 3.4 11.9 1.0
O6 B:DG9 3.4 10.9 1.0
C6 B:DG9 3.4 10.9 1.0
C2 A:DC3 3.5 12.7 1.0
N3 A:DC4 3.5 10.1 1.0
H61 B:DA2 3.7 15.0 1.0
N3 A:DC3 3.8 10.9 1.0
AG A:AG105 3.9 10.5 1.0
C2 B:DG9 4.0 10.4 1.0
N6 B:DA2 4.1 12.5 1.0
N1 B:DA2 4.2 11.3 1.0
H41 B:DC1 4.2 14.2 1.0
H1' A:DC3 4.3 16.4 1.0
H22 B:DG9 4.3 14.0 1.0
C5 B:DG9 4.3 11.1 1.0
N1 B:DC1 4.4 11.4 1.0
N2 B:DG9 4.5 11.7 1.0
C6 B:DA2 4.5 11.9 1.0
N1 A:DC4 4.5 10.4 1.0
H42 B:DC3 4.6 15.9 1.0
H1' A:DC4 4.6 13.9 1.0
N1 A:DC3 4.6 12.2 1.0
C5 B:DC1 4.6 11.4 1.0
H62 B:DA2 4.6 15.0 1.0
H42 B:DC4 4.7 15.1 1.0
C4 A:DC4 4.8 10.7 1.0
N3 B:DG9 4.8 12.1 1.0
C4 B:DG9 4.8 11.7 1.0
AG A:AG103 4.8 10.1 1.0
N3 B:DC3 4.8 12.2 1.0
O6 A:DG9 4.9 11.3 1.0
C1' A:DC3 5.0 13.7 1.0
AG A:AG106 5.0 10.1 1.0

Reference:

C.Cerretani, J.Kondo, T.Vosch. Mutation of Position 5 As A Crystal Engineering Tool For A Nir-Emitting Dna-Stabilized AG16 Nanocluster. Crystengcomm V. 22 8136 2020.
ISSN: ISSN 1466-8033
DOI: 10.1039/D0CE01225D
Page generated: Wed Jul 10 08:39:47 2024

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