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Silver in PDB 7bsf: Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)

Protein crystallography data

The structure of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant), PDB code: 7bsf was solved by J.Kondo, C.Cerretani, T.Vosch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.43 / 1.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 23.958, 33.807, 52.523, 90.00, 90.00, 90.00
R / Rfree (%) 7.5 / 8.3

Other elements in 7bsf:

The structure of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Silver Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Silver atom in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) (pdb code 7bsf). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 18 binding sites of Silver where determined in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant), PDB code: 7bsf:
Jump to Silver binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Silver binding site 1 out of 18 in 7bsf

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Silver binding site 1 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag101

b:5.6
occ:1.00
N3 A:DC3 2.3 6.3 1.0
O2 A:DC1 2.4 6.0 1.0
AG A:AG105 2.7 5.4 1.0
AG B:AG104 2.8 5.7 1.0
AG A:AG102 2.8 5.5 1.0
AG B:AG101 2.8 5.6 1.0
H42 A:DC3 2.9 9.0 1.0
N1 A:DA2 3.0 5.3 1.0
C2 A:DC3 3.0 6.9 1.0
O2 A:DC3 3.0 6.5 1.0
C2 A:DA2 3.2 5.8 1.0
O6 A:DG9 3.3 5.7 1.0
C4 A:DC3 3.3 6.9 1.0
C6 A:DA2 3.3 5.2 1.0
C2 A:DC1 3.4 5.6 1.0
N4 A:DC3 3.4 7.5 1.0
H2 A:DA2 3.5 7.0 1.0
N3 A:DC1 3.7 5.4 1.0
N3 A:DC4 3.7 5.8 1.0
H42 A:DC4 3.8 8.1 1.0
N3 A:DA2 3.8 6.3 1.0
C5 A:DA2 3.8 5.3 1.0
N6 A:DA2 3.9 5.4 1.0
AG B:AG102 4.0 5.5 1.0
C4 A:DA2 4.0 6.0 1.0
H61 A:DA2 4.0 6.5 1.0
C6 A:DG9 4.1 5.7 1.0
H41 A:DC3 4.3 9.0 1.0
N4 A:DC4 4.3 6.7 1.0
C4 A:DC4 4.4 6.0 1.0
N1 A:DC3 4.4 8.6 1.0
C2 A:DC4 4.4 6.2 1.0
H62 A:DA2 4.4 6.5 1.0
O2 A:DC4 4.5 6.3 1.0
H1' A:DC1 4.5 8.6 1.0
O2 B:DC3 4.5 6.5 1.0
C5 A:DC3 4.6 8.0 1.0
N3 B:DC1 4.6 7.0 1.0
O2 B:DC1 4.6 6.6 1.0
H2' A:DA2 4.6 11.3 1.0
N1 A:DC1 4.7 6.5 1.0
N7 A:DA2 4.8 6.0 1.0
AG A:AG106 4.8 5.4 1.0
N1 A:DG9 4.8 5.5 1.0
C5 A:DG9 4.9 5.5 1.0
H41 A:DC4 5.0 8.1 1.0
N9 A:DA2 5.0 5.9 1.0
C6 A:DC3 5.0 8.3 1.0
N3 B:DC3 5.0 6.4 1.0

Silver binding site 2 out of 18 in 7bsf

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Silver binding site 2 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag102

b:5.5
occ:1.00
O6 A:DG9 2.3 5.7 1.0
N3 A:DC4 2.4 5.8 1.0
AG A:AG106 2.7 5.4 1.0
AG B:AG102 2.8 5.5 1.0
AG B:AG104 2.8 5.7 1.0
AG A:AG101 2.8 5.6 1.0
AG A:AG103 2.9 5.4 1.0
AG B:AG105 2.9 5.7 1.0
AG A:AG105 3.0 5.4 1.0
H42 A:DC4 3.1 8.1 1.0
O2 A:DC4 3.1 6.3 1.0
C2 A:DC4 3.1 6.2 1.0
C6 A:DG9 3.4 5.7 1.0
C4 A:DC4 3.4 6.0 1.0
N4 A:DC4 3.6 6.7 1.0
N1 A:DG9 3.7 5.5 1.0
AG B:AG109 3.9 5.5 1.0
N3 A:DC3 3.9 6.3 1.0
AG B:AG101 4.0 5.6 1.0
N3 A:DC8 4.1 5.4 1.0
O2 A:DC3 4.2 6.5 1.0
O2 B:DC4 4.3 5.6 1.0
C2 A:DC3 4.4 6.9 1.0
H41 A:DC4 4.4 8.1 1.0
O2 A:DC1 4.4 6.0 1.0
O2 A:DC8 4.5 6.0 1.0
C2 A:DC8 4.5 4.8 1.0
N1 A:DC4 4.5 7.5 1.0
H42 A:DC3 4.5 9.0 1.0
H42 A:DC8 4.6 7.4 1.0
O6 B:DG9 4.6 7.5 1.0
N3 A:DC1 4.7 5.4 1.0
N1 B:DG9 4.7 6.8 1.0
C5 A:DG9 4.7 5.5 1.0
C4 A:DC8 4.7 6.1 1.0
C5 A:DC4 4.7 7.0 1.0
C4 A:DC3 4.7 6.9 1.0
H42 B:DC1 4.8 10.3 1.0
AG A:AG109 4.8 6.3 0.3
N3 B:DC4 4.9 6.0 1.0
N4 A:DC8 4.9 6.2 1.0
N4 A:DC3 4.9 7.5 1.0
C2 A:DC1 5.0 5.6 1.0

Silver binding site 3 out of 18 in 7bsf

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Silver binding site 3 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag103

b:5.4
occ:1.00
N3 A:DC8 2.2 5.4 1.0
AG B:AG105 2.7 5.7 1.0
AG B:AG109 2.7 5.5 1.0
AG A:AG107 2.8 5.4 1.0
AG A:AG106 2.8 5.4 1.0
AG A:AG102 2.9 5.5 1.0
AG B:AG106 2.9 5.5 1.0
H42 A:DC8 3.0 7.4 1.0
C2 A:DC8 3.0 4.8 1.0
O2 A:DC8 3.0 6.0 1.0
AG A:AG109 3.1 6.3 0.3
AG A:AG104 3.1 5.3 1.0
C4 A:DC8 3.2 6.1 1.0
N4 A:DC8 3.4 6.2 1.0
N3 A:DC4 3.6 5.8 1.0
C2 A:DC4 3.9 6.2 1.0
O2 A:DC4 3.9 6.3 1.0
O6 A:DG9 4.0 5.7 1.0
AG B:AG102 4.1 5.5 1.0
H41 A:DC8 4.3 7.4 1.0
N1 A:DC8 4.3 5.3 1.0
C4 A:DC4 4.3 6.0 1.0
AG B:AG108 4.4 6.0 0.3
H42 A:DC4 4.4 8.1 1.0
N7 A:DG7 4.5 5.1 1.0
AG B:AG103 4.5 5.6 1.0
N1 A:DG9 4.5 5.5 1.0
OP1 A:DA6 4.5 6.8 1.0
C5 A:DC8 4.5 5.9 1.0
O2 B:DC8 4.6 6.3 1.0
C6 A:DG9 4.6 5.7 1.0
N4 A:DC4 4.6 6.7 1.0
H22 B:DG9 4.7 9.4 1.0
N3 B:DC8 4.8 6.1 1.0
N1 A:DC4 4.9 7.5 1.0
C6 A:DC8 4.9 5.8 1.0
AG B:AG104 4.9 5.7 1.0
N1 B:DG9 5.0 6.8 1.0

Silver binding site 4 out of 18 in 7bsf

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Silver binding site 4 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag104

b:5.3
occ:1.00
N7 A:DG7 2.3 5.1 1.0
OP1 A:DA6 2.3 6.8 1.0
AG A:AG107 2.7 5.4 1.0
AG B:AG107 2.8 5.9 1.0
AG B:AG106 2.8 5.5 1.0
AG A:AG108 2.8 5.6 1.0
N3 A:DC8 2.9 5.4 1.0
AG A:AG103 3.1 5.4 1.0
C8 A:DG7 3.2 5.3 1.0
H8 A:DG7 3.3 6.3 1.0
P A:DA6 3.3 6.5 1.0
C5 A:DG7 3.4 4.5 1.0
C2 A:DC8 3.5 4.8 1.0
OP2 A:DA6 3.5 8.0 1.0
O2 A:DC8 3.5 6.0 1.0
H42 A:DC8 3.6 7.4 1.0
C4 A:DC8 3.6 6.1 1.0
O6 A:DG7 3.7 5.5 1.0
H8 A:DA6 3.7 8.5 1.0
AG B:AG103 3.7 5.6 1.0
N4 A:DC8 3.9 6.2 1.0
AG A:AG109 3.9 6.3 0.3
C6 A:DG7 3.9 5.0 1.0
N7 A:DA6 4.0 6.2 1.0
C8 A:DA6 4.1 7.1 1.0
O5' A:DA6 4.3 8.0 1.0
O6 B:DG7 4.3 7.5 1.0
N9 A:DG7 4.4 5.0 1.0
H3' A:DC5 4.5 10.6 1.0
AG B:AG109 4.5 5.5 1.0
N1 A:DC8 4.5 5.3 1.0
C4 A:DG7 4.5 5.0 1.0
H41 A:DC8 4.6 7.4 1.0
O3' A:DC5 4.6 10.0 1.0
O A:HOH214 4.7 7.6 1.0
C5 A:DC8 4.7 5.9 1.0
N7 B:DA6 4.9 6.5 1.0
H2'' A:DC5 4.9 10.8 1.0
C3' A:DC5 5.0 8.8 1.0

Silver binding site 5 out of 18 in 7bsf

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Silver binding site 5 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 5 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag105

b:5.4
occ:1.00
N3 A:DC1 2.3 5.4 1.0
O2 B:DC4 2.5 5.6 1.0
AG A:AG101 2.7 5.6 1.0
AG B:AG102 2.8 5.5 1.0
AG B:AG101 2.8 5.6 1.0
O2 B:DC3 2.8 6.5 1.0
H42 A:DC1 2.8 7.5 1.0
AG A:AG102 3.0 5.5 1.0
C2 A:DC1 3.1 5.6 1.0
O2 A:DC1 3.1 6.0 1.0
AG A:AG106 3.1 5.4 1.0
O6 A:DG9 3.2 5.7 1.0
C4 A:DC1 3.3 5.8 1.0
N1 A:DG9 3.3 5.5 1.0
C2 B:DC4 3.3 6.0 1.0
N4 A:DC1 3.4 6.3 1.0
C6 A:DG9 3.4 5.7 1.0
H61 A:DA2 3.5 6.5 1.0
N3 B:DC4 3.6 6.0 1.0
C2 B:DC3 3.6 6.7 1.0
N3 B:DC3 3.9 6.4 1.0
N6 A:DA2 3.9 5.4 1.0
AG B:AG104 4.0 5.7 1.0
N1 A:DA2 4.1 5.3 1.0
H41 A:DC1 4.2 7.5 1.0
C2 A:DG9 4.2 5.0 1.0
C6 A:DA2 4.2 5.2 1.0
H62 A:DA2 4.3 6.5 1.0
H22 A:DG9 4.4 6.9 1.0
N1 A:DC1 4.5 6.5 1.0
H1' B:DC4 4.5 8.8 1.0
C5 A:DG9 4.5 5.5 1.0
N1 B:DC4 4.5 6.5 1.0
H42 A:DC3 4.5 9.0 1.0
C5 A:DC1 4.6 7.1 1.0
H1' B:DC3 4.6 8.8 1.0
N2 A:DG9 4.6 5.8 1.0
N1 B:DC3 4.8 6.6 1.0
H42 A:DC4 4.8 8.1 1.0
C4 B:DC4 4.8 6.1 1.0
AG B:AG109 4.8 5.5 1.0
N3 A:DC3 4.9 6.3 1.0
C1' B:DC4 5.0 7.4 1.0

Silver binding site 6 out of 18 in 7bsf

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Silver binding site 6 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 6 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag106

b:5.4
occ:1.00
N1 A:DG9 2.3 5.5 1.0
O2 B:DC4 2.7 5.6 1.0
AG B:AG108 2.7 6.0 0.3
AG B:AG109 2.7 5.5 1.0
AG A:AG102 2.7 5.5 1.0
H22 A:DG9 2.8 6.9 1.0
AG A:AG103 2.8 5.4 1.0
O6 A:DG9 3.0 5.7 1.0
C6 A:DG9 3.1 5.7 1.0
AG B:AG102 3.1 5.5 1.0
AG A:AG105 3.1 5.4 1.0
AG A:AG107 3.2 5.4 1.0
C2 A:DG9 3.3 5.0 1.0
O2 A:DC8 3.3 6.0 1.0
N2 A:DG9 3.4 5.8 1.0
C2 B:DC4 3.5 6.0 1.0
N3 B:DC4 3.9 6.0 1.0
H42 A:DC1 4.0 7.5 1.0
AG B:AG105 4.0 5.7 1.0
H42 B:DC8 4.0 7.8 1.0
C2 A:DC8 4.0 4.8 1.0
H1' B:DC4 4.1 8.8 1.0
H21 A:DG9 4.2 6.9 1.0
N3 A:DC8 4.2 5.4 1.0
C5 A:DG9 4.4 5.5 1.0
N3 A:DC1 4.5 5.4 1.0
N1 B:DC4 4.5 6.5 1.0
N3 A:DG9 4.5 5.9 1.0
H42 A:DC4 4.6 8.1 1.0
N4 A:DC1 4.6 6.3 1.0
N3 B:DC8 4.7 6.1 1.0
C1' B:DC4 4.8 7.4 1.0
N4 B:DC8 4.8 6.5 1.0
N3 A:DC4 4.8 5.8 1.0
AG A:AG101 4.8 5.6 1.0
AG B:AG106 4.9 5.5 1.0
C4 A:DG9 4.9 5.5 1.0
C4 A:DC1 5.0 5.8 1.0

Silver binding site 7 out of 18 in 7bsf

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Silver binding site 7 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 7 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag107

b:5.4
occ:1.00
AG B:AG108 2.6 6.0 0.3
O6 A:DG7 2.6 5.5 1.0
O2 A:DC8 2.7 6.0 1.0
AG A:AG104 2.7 5.3 1.0
AG A:AG108 2.8 5.6 1.0
AG B:AG103 2.8 5.6 1.0
AG A:AG103 2.8 5.4 1.0
AG B:AG109 2.9 5.5 1.0
AG A:AG106 3.2 5.4 1.0
AG B:AG106 3.3 5.5 1.0
C6 A:DG7 3.5 5.0 1.0
C2 A:DC8 3.6 4.8 1.0
N3 A:DC8 3.7 5.4 1.0
N7 A:DG7 3.7 5.1 1.0
OP1 B:DA6 3.8 5.6 1.0
C5 A:DG7 3.9 4.5 1.0
H2'' B:DC5 4.0 7.4 1.0
H42 B:DC8 4.0 7.8 1.0
AG B:AG107 4.1 5.9 1.0
H22 A:DG9 4.3 6.9 1.0
OP2 B:DA6 4.3 6.3 1.0
N3 B:DC8 4.4 6.1 1.0
P B:DA6 4.4 5.5 1.0
N1 A:DG9 4.6 5.5 1.0
O3' B:DC5 4.6 6.9 1.0
N1 A:DG7 4.7 5.0 1.0
N4 B:DC8 4.8 6.5 1.0
H1' A:DC8 4.8 7.2 1.0
H3' B:DC5 4.8 7.9 1.0
C2' B:DC5 4.8 6.1 1.0
N2 A:DG9 4.8 5.8 1.0
N1 A:DC8 4.8 5.3 1.0
N7 A:DA6 4.9 6.2 1.0
H62 A:DA6 4.9 7.2 1.0
AG B:AG105 4.9 5.7 1.0
H1 A:DG7 4.9 6.0 1.0
C4 A:DC8 5.0 6.1 1.0
C8 A:DG7 5.0 5.3 1.0
C3' B:DC5 5.0 6.6 1.0

Silver binding site 8 out of 18 in 7bsf

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Silver binding site 8 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 8 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag108

b:5.6
occ:1.00
N7 A:DA6 2.3 6.2 1.0
OP2 B:DA6 2.3 6.3 1.0
O6 A:DG7 2.5 5.5 1.0
AG B:AG107 2.7 5.9 1.0
AG A:AG107 2.8 5.4 1.0
AG B:AG103 2.8 5.6 1.0
AG A:AG104 2.8 5.3 1.0
H62 A:DA6 3.0 7.2 1.0
H8 B:DA6 3.0 7.7 1.0
C6 A:DG7 3.1 5.0 1.0
C8 A:DA6 3.2 7.1 1.0
H8 A:DA6 3.3 8.5 1.0
P B:DA6 3.3 5.5 1.0
C5 A:DA6 3.3 5.8 1.0
N7 A:DG7 3.5 5.1 1.0
C5 A:DG7 3.5 4.5 1.0
OP1 B:DA6 3.6 5.6 1.0
C8 B:DA6 3.6 6.4 1.0
N6 A:DA6 3.7 6.0 1.0
N7 B:DA6 3.7 6.5 1.0
C6 A:DA6 3.9 5.4 1.0
O3' B:DC5 3.9 6.9 1.0
AG B:AG106 4.1 5.5 1.0
OP2 A:DA6 4.2 8.0 1.0
N1 A:DG7 4.3 5.0 1.0
N9 A:DA6 4.4 6.4 1.0
H61 A:DA6 4.4 7.2 1.0
C4 A:DA6 4.5 6.0 1.0
H1 A:DG7 4.5 6.0 1.0
H2'' B:DC5 4.6 7.4 1.0
N7 B:DG7 4.6 6.9 1.0
AG B:AG108 4.6 6.0 0.3
C8 A:DG7 4.7 5.3 1.0
O2 A:DC8 4.7 6.0 1.0
O5' B:DA6 4.7 6.1 1.0
OP1 A:DA6 4.7 6.8 1.0
C4 A:DG7 4.8 5.0 1.0
O6 B:DG7 5.0 7.5 1.0
H5' B:DA6 5.0 8.4 1.0
N9 B:DA6 5.0 7.1 1.0
C3' B:DC5 5.0 6.6 1.0
P A:DA6 5.0 6.5 1.0

Silver binding site 9 out of 18 in 7bsf

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Silver binding site 9 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 9 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag109

b:6.3
occ:0.32
H42 A:DC8 2.4 7.4 1.0
H22 B:DG9 2.5 9.4 1.0
AG B:AG106 2.6 5.5 1.0
AG B:AG105 2.8 5.7 1.0
AG A:AG103 3.1 5.4 1.0
H3' A:DC5 3.2 10.6 1.0
H2' A:DC5 3.2 10.8 1.0
H2'' A:DC5 3.3 10.8 1.0
N4 A:DC8 3.3 6.2 1.0
N2 B:DG9 3.3 7.8 1.0
O2 A:DC4 3.4 6.3 1.0
H61 B:DA10 3.5 13.3 1.0
H62 B:DA10 3.5 13.3 1.0
H2'' A:DC4 3.5 11.5 1.0
C2' A:DC5 3.6 9.0 1.0
H2' A:DC4 3.6 11.5 1.0
H1' A:DC4 3.7 10.4 1.0
OP1 A:DA6 3.7 6.8 1.0
H41 A:DC8 3.8 7.4 1.0
C3' A:DC5 3.8 8.8 1.0
C2 A:DC4 3.8 6.2 1.0
H21 B:DG9 3.8 9.4 1.0
N6 B:DA10 3.8 11.1 1.0
O2 B:DC8 3.8 6.3 1.0
C2' A:DC4 3.9 9.6 1.0
AG A:AG104 3.9 5.3 1.0
N1 B:DG9 4.0 6.8 1.0
O6 B:DG7 4.0 7.5 1.0
C1' A:DC4 4.1 8.7 1.0
N3 A:DC8 4.1 5.4 1.0
C2 B:DG9 4.1 7.3 1.0
N1 A:DC4 4.1 7.5 1.0
C4 A:DC8 4.2 6.1 1.0
AG B:AG109 4.3 5.5 1.0
H5' A:DC5 4.4 13.3 1.0
N3 A:DC4 4.5 5.8 1.0
O3' A:DC5 4.6 10.0 1.0
P A:DA6 4.6 6.5 1.0
O B:HOH217 4.6 18.3 1.0
AG B:AG107 4.7 5.9 1.0
AG A:AG102 4.8 5.5 1.0
C2 B:DC8 5.0 6.5 1.0
C4' A:DC5 5.0 9.2 1.0

Silver binding site 10 out of 18 in 7bsf

Go back to Silver Binding Sites List in 7bsf
Silver binding site 10 out of 18 in the Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant)


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 10 of Crystal Structure of A Nir-Emitting Dna-Stabilized AG16 Nanocluster (T5C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ag101

b:5.6
occ:1.00
N3 B:DC3 2.3 6.4 1.0
N1 A:DA2 2.5 5.3 1.0
O2 B:DC1 2.5 6.6 1.0
AG B:AG104 2.7 5.7 1.0
AG A:AG105 2.8 5.4 1.0
AG A:AG101 2.8 5.6 1.0
AG B:AG102 2.9 5.5 1.0
O2 B:DC3 2.9 6.5 1.0
C2 B:DC3 3.0 6.7 1.0
H61 A:DA2 3.1 6.5 1.0
H42 B:DC3 3.1 8.9 1.0
H2 A:DA2 3.1 7.0 1.0
C2 A:DA2 3.2 5.8 1.0
C4 B:DC3 3.4 6.7 1.0
C6 A:DA2 3.4 5.2 1.0
C2 B:DC1 3.5 6.5 1.0
N6 A:DA2 3.5 5.4 1.0
N4 B:DC3 3.6 7.4 1.0
N3 B:DC1 3.8 7.0 1.0
O6 B:DG9 3.9 7.5 1.0
AG A:AG102 4.0 5.5 1.0
N3 B:DC4 4.0 6.0 1.0
H42 B:DC4 4.3 8.1 1.0
O2 A:DC1 4.3 6.0 1.0
H62 A:DA2 4.3 6.5 1.0
N1 B:DC3 4.4 6.6 1.0
O2 A:DC3 4.4 6.5 1.0
H41 B:DC3 4.4 8.9 1.0
N3 A:DA2 4.4 6.3 1.0
O2 B:DC4 4.5 5.6 1.0
N3 A:DC1 4.5 5.4 1.0
C6 B:DG9 4.5 6.8 1.0
H1' B:DC1 4.6 9.6 1.0
C5 A:DA2 4.6 5.3 1.0
C2 B:DC4 4.6 6.0 1.0
C5 B:DC3 4.7 7.1 1.0
N1 B:DC1 4.8 7.7 1.0
C4 B:DC4 4.8 6.1 1.0
C2 A:DC1 4.8 5.6 1.0
N4 B:DC4 4.8 6.8 1.0
N3 A:DC3 4.8 6.3 1.0
C4 A:DA2 4.9 6.0 1.0

Reference:

C.Cerretani, J.Kondo, T.Vosch. Mutation of Position 5 As A Crystal Engineering Tool For A Nir-Emitting Dna-Stabilized AG16 Nanocluster. Crystengcomm V. 22 8136 2020.
ISSN: ISSN 1466-8033
DOI: 10.1039/D0CE01225D
Page generated: Thu Dec 17 06:16:43 2020

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