Silver in PDB 6z8u: Copper Transporter Oprc

The structure of Copper Transporter Oprc, PDB code: 6z8u was solved by S.P.Bhamidimarri, B.Van Den Berg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.14 / 2.61
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	155.113, 195.716, 165.301, 90, 90, 90
R / Rfree (%)	21.2 / 27.3

The binding sites of Silver atom in the Copper Transporter Oprc (pdb code 6z8u). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 6 binding sites of Silver where determined in the Copper Transporter Oprc, PDB code: 6z8u:
Jump to Silver binding site number: 1; 2; 3; 4; 5; 6;

Silver binding site 1 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag801 b:67.7 occ:1.00 SD A:MET325 2.1 95.4 1.0 SG A:CYS143 2.3 58.6 1.0 CE A:MET147 2.6 81.2 1.0 SD A:MET147 2.7 75.8 1.0 CE A:MET325 2.7 71.9 1.0 CG A:MET147 3.4 62.2 1.0 CG A:MET325 3.5 88.0 1.0 CB A:CYS143 3.8 61.0 1.0 CB A:MET325 3.8 64.4 1.0 CB A:MET147 4.0 55.7 1.0 CA A:CYS143 4.7 61.3 1.0 CD A:PRO144 4.9 41.8 1.0

Silver binding site 2 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag802 b:103.0 occ:1.00 SD A:MET286 2.8 72.3 1.0 SD A:MET339 2.8 100.0 1.0 CE A:MET339 2.9 105.6 1.0 CE A:MET286 3.0 79.8 1.0 CE A:MET343 3.1 89.1 1.0 CG A:MET286 3.2 56.9 1.0 SD A:MET343 3.5 94.2 1.0 CG A:MET343 3.6 78.6 1.0 CG A:MET339 3.8 95.9 1.0 CB A:MET339 4.3 94.6 1.0 CB A:MET343 4.3 60.4 1.0 CB A:MET286 4.5 50.5 1.0 ND2 A:ASN327 4.8 73.0 1.0 CG A:ASN327 4.9 56.3 1.0 CB A:ASN327 4.9 45.3 1.0

Silver binding site 3 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag803 b:213.9 occ:1.00 CE A:MET341 2.7 126.9 1.0 CE A:MET343 2.9 89.1 1.0 SD A:MET341 3.2 128.0 1.0 CG A:MET341 3.3 113.9 1.0 SD A:MET343 3.6 94.2 1.0 CA A:MET339 4.5 92.0 1.0 O A:MET338 4.5 70.7 1.0 CB A:MET343 4.5 60.4 1.0 CB A:MET339 4.6 94.6 1.0 CB A:MET341 4.8 104.0 1.0 CG A:MET343 4.8 78.6 1.0 CG A:MET339 4.9 95.9 1.0

Silver binding site 4 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag801 b:72.5 occ:1.00 CE B:MET325 2.3 76.3 1.0 SD B:MET325 2.3 83.8 1.0 SG B:CYS143 2.5 60.3 1.0 CE B:MET147 2.7 79.5 1.0 SD B:MET147 2.8 73.9 1.0 CG B:MET147 3.4 63.6 1.0 CB B:CYS143 3.7 58.7 1.0 CG B:MET325 3.7 75.2 1.0 CB B:MET325 4.0 64.7 1.0 CB B:MET147 4.0 53.1 1.0 CD B:PRO144 4.4 62.6 1.0 CA B:CYS143 4.6 56.8 1.0 ND2 B:ASN145 4.7 66.7 1.0 CB B:ASN145 4.9 64.2 1.0 N B:MET147 5.0 57.8 1.0

Silver binding site 5 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 5 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag802 b:131.1 occ:1.00 SD B:MET339 2.8 107.3 1.0 SD B:MET343 3.2 96.1 1.0 SD B:MET286 3.2 81.9 1.0 CE B:MET339 3.2 107.5 1.0 CG B:MET343 3.4 74.6 1.0 CG B:MET286 3.5 63.9 1.0 CE B:MET286 3.6 75.9 1.0 CG B:MET339 4.0 98.2 1.0 CB B:MET339 4.1 90.1 1.0 CE B:MET343 4.5 97.2 1.0 ND1 B:HIS447 4.7 143.3 1.0 ND2 B:ASN327 4.8 71.7 1.0 CB B:MET286 4.8 57.6 1.0 CB B:MET343 4.8 51.9 1.0 CE1 B:HIS447 4.9 143.1 1.0 O B:GLY285 4.9 61.6 1.0

Silver binding site 6 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 6 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag803 b:127.1 occ:1.00 CE B:MET341 2.5 148.4 1.0 SD B:MET448 2.6 141.4 1.0 SD B:MET341 2.7 143.2 1.0 SD B:MET343 3.4 96.1 1.0 CE B:MET343 3.5 97.2 1.0 CE B:MET448 3.5 142.3 1.0 CB B:MET341 3.7 105.9 1.0 CG B:MET341 3.8 127.7 1.0 CG B:MET448 3.8 126.6 1.0 CG B:MET343 4.4 74.6 1.0 CB B:MET343 4.5 51.9 1.0 CA B:MET341 4.8 92.2 1.0 O B:MET341 4.8 82.3 1.0 N B:MET341 4.9 90.5 1.0 CB B:MET339 4.9 90.1 1.0 CA B:MET339 5.0 94.0 1.0

S.P.Bhamidimarri, T.R.Young, M.Shanmugam, S.Soderholm, B.Belzunces, S.Khalid, A.Basle, D.Bumann, B.Van Den Berg. Acquisition of Ionic Copper By A Bacterial Outer Membrane Protein To Be Published.