Silver in PDB 6z8t: Copper Transporter Oprc

The structure of Copper Transporter Oprc, PDB code: 6z8t was solved by S.P.Bhamidimarri, B.Van Den Berg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.41 / 2.86
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	155.521, 196.453, 165.878, 90, 90, 90
R / Rfree (%)	20.7 / 27.2

The binding sites of Silver atom in the Copper Transporter Oprc (pdb code 6z8t). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 5 binding sites of Silver where determined in the Copper Transporter Oprc, PDB code: 6z8t:
Jump to Silver binding site number: 1; 2; 3; 4; 5;

Silver binding site 1 out of 5 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag801 b:88.1 occ:1.00 SD A:MET325 2.3 92.9 1.0 SG A:CYS143 2.4 68.7 1.0 CE A:MET147 2.5 76.2 1.0 SD A:MET147 2.6 76.4 1.0 CG A:MET325 3.6 87.2 1.0 CG A:MET147 3.7 75.0 1.0 CE A:MET325 3.8 95.7 1.0 CB A:CYS143 3.9 69.0 1.0 CB A:MET325 3.9 75.2 1.0 CB A:MET147 4.4 60.6 1.0 CA A:CYS143 4.7 57.5 1.0 CD A:PRO144 4.8 57.7 1.0 CB A:ASN145 4.9 80.3 1.0 ND2 A:ASN145 5.0 88.1 1.0

Silver binding site 2 out of 5 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag802 b:122.7 occ:1.00 CE A:MET339 2.4 117.6 1.0 CE A:MET286 2.5 93.8 1.0 SD A:MET339 2.7 112.2 1.0 SD A:MET286 3.0 95.2 1.0 CG A:MET339 3.3 109.5 1.0 CG A:MET286 3.6 89.4 1.0 CB A:MET343 4.0 75.4 1.0 CB A:MET339 4.2 102.1 1.0 SD A:MET343 4.3 103.6 1.0 CG A:MET343 4.4 91.2 1.0 CE A:MET343 4.9 97.6 1.0 ND2 A:ASN327 5.0 69.2 1.0

Silver binding site 3 out of 5 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag801 b:94.6 occ:1.00 SD B:MET325 2.2 85.3 1.0 SG B:CYS143 2.4 55.1 1.0 SD B:MET147 2.6 78.4 1.0 CG B:MET325 3.4 86.3 1.0 CE B:MET325 3.4 86.7 1.0 CG B:MET147 3.7 70.3 1.0 CB B:MET325 3.9 79.8 1.0 CE B:MET147 4.1 82.5 1.0 CB B:CYS143 4.2 64.7 1.0 OD1 B:ASN145 4.4 78.3 1.0 CB B:ASN145 4.6 92.8 1.0 CD B:PRO144 4.6 76.6 1.0 CE B:MET286 4.7 99.2 1.0 CB B:MET147 4.7 66.1 1.0 CA B:CYS143 4.8 65.3 1.0 N B:ASN145 4.9 90.2 1.0 CG B:ASN145 5.0 89.3 1.0

Silver binding site 4 out of 5 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag802 b:149.1 occ:1.00 SD B:MET339 2.5 126.2 1.0 CG B:MET339 3.2 115.0 1.0 CE B:MET339 3.3 118.1 1.0 CG B:MET286 3.4 79.3 1.0 SD B:MET286 3.4 102.1 1.0 SD B:MET343 3.5 93.8 1.0 CE B:MET343 3.6 95.4 1.0 CB B:MET339 3.8 99.0 1.0 CE B:MET286 4.0 99.2 1.0 CB B:MET343 4.0 58.5 1.0 CG B:MET343 4.2 80.5 1.0 ND2 B:ASN327 4.7 77.5 1.0 CB B:MET286 4.9 70.5 1.0

Silver binding site 5 out of 5 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 5 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag803 b:130.7 occ:1.00 SD B:MET341 2.6 115.2 1.0 CE B:MET343 2.7 95.4 1.0 CG B:MET341 3.3 106.0 1.0 SD B:MET343 3.4 93.8 1.0 CB B:MET341 3.5 94.5 1.0 CG B:MET343 4.2 80.5 1.0 CE B:MET341 4.3 105.7 1.0 O B:MET341 4.4 90.5 1.0 CA B:MET341 4.5 86.5 1.0 N B:MET341 4.6 91.3 1.0 CB B:MET343 4.7 58.5 1.0 O B:MET338 4.8 95.2 1.0 C B:MET341 4.9 82.7 1.0 CA B:MET339 4.9 93.8 1.0

S.P.Bhamidimarri, T.R.Young, M.Shanmugam, S.Soderholm, B.Belzunces, S.Khalid, A.Basle, D.Bumann, B.Van Den Berg. Acquisition of Ionic Copper By A Bacterial Outer Membrane Protein To Be Published.