Silver in PDB 6z8q: Copper Transporter Oprc

The structure of Copper Transporter Oprc, PDB code: 6z8q was solved by S.P.Bhamidimarri, B.Van Den Berg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	97.65 / 2.71
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	156.2, 195.29, 167.34, 90, 90, 90
R / Rfree (%)	21.6 / 25.4

The binding sites of Silver atom in the Copper Transporter Oprc (pdb code 6z8q). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 6 binding sites of Silver where determined in the Copper Transporter Oprc, PDB code: 6z8q:
Jump to Silver binding site number: 1; 2; 3; 4; 5; 6;

Silver binding site 1 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag801 b:82.3 occ:1.00 NE2 A:HIS323 2.4 63.2 1.0 SG A:CYS143 2.6 84.1 1.0 SD A:MET147 2.8 73.0 1.0 SD A:MET325 2.9 87.9 1.0 CE A:MET325 3.2 79.9 1.0 CD2 A:HIS323 3.2 61.1 1.0 CB A:CYS143 3.3 73.2 1.0 CB A:MET325 3.4 60.7 1.0 CG A:MET147 3.5 76.3 1.0 CE1 A:HIS323 3.5 64.1 1.0 CG A:MET325 3.6 68.6 1.0 CB A:MET147 3.7 74.1 1.0 CE A:MET147 4.0 77.3 1.0 CA A:CYS143 4.4 73.0 1.0 CG A:HIS323 4.4 62.2 1.0 ND1 A:HIS323 4.5 62.6 1.0 CA A:MET325 4.7 62.8 1.0 N A:MET147 4.9 71.3 1.0 CA A:MET147 4.9 72.3 1.0 N A:MET325 5.0 63.8 1.0

Silver binding site 2 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag802 b:171.1 occ:1.00 CE A:MET339 2.5 142.6 1.0 SD A:MET339 2.8 142.8 1.0 CE A:MET286 2.8 91.6 1.0 SD A:MET286 3.3 93.2 1.0 SD A:MET343 3.4 123.9 1.0 CG A:MET286 3.6 76.5 1.0 CG A:MET339 3.6 137.3 1.0 CG A:MET343 3.7 94.4 1.0 CB A:MET339 4.3 128.8 1.0 CE A:MET343 4.5 109.3 1.0 CB A:MET286 4.7 74.8 1.0

Silver binding site 3 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag803 b:166.6 occ:1.00 SD A:MET341 2.7 147.4 1.0 CG A:MET341 2.7 122.7 1.0 CE A:MET341 3.1 133.3 1.0 SD A:MET343 3.4 123.9 1.0 CE A:MET343 3.9 109.3 1.0 CB A:MET341 4.1 113.8 1.0 O A:MET338 4.5 136.7 1.0 CG A:MET343 4.6 94.4 1.0 CB A:MET343 4.6 85.6 1.0 CA A:MET339 4.7 125.5 1.0 O A:MET341 4.8 95.0 1.0 CB A:MET339 5.0 128.8 1.0

Silver binding site 4 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag801 b:89.1 occ:1.00 NE2 B:HIS323 2.4 70.2 1.0 SG B:CYS143 2.6 91.1 1.0 SD B:MET325 2.7 90.9 1.0 SD B:MET147 3.0 89.7 1.0 CE B:MET147 3.2 78.8 1.0 CD2 B:HIS323 3.2 74.2 1.0 CG B:MET325 3.2 88.1 1.0 CE B:MET325 3.3 90.5 1.0 CE1 B:HIS323 3.4 73.5 1.0 CB B:CYS143 3.4 84.7 1.0 CB B:MET325 3.4 77.4 1.0 CG B:MET147 3.8 90.2 1.0 CB B:MET147 3.8 85.5 1.0 CA B:CYS143 4.3 85.7 1.0 CG B:HIS323 4.4 74.4 1.0 ND1 B:HIS323 4.4 72.5 1.0 CA B:MET325 4.8 74.1 1.0 CD B:PRO144 4.8 93.0 1.0

Silver binding site 5 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 5 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag802 b:196.3 occ:1.00 CE B:MET343 2.3 126.5 1.0 SD B:MET339 3.5 164.0 1.0 CG B:MET339 3.7 152.1 1.0 CG B:MET286 3.7 83.0 1.0 CE B:MET286 3.7 105.8 1.0 SD B:MET343 3.9 129.0 1.0 SD B:MET286 3.9 103.8 1.0 CE B:MET339 4.1 147.3 1.0 NE2 B:HIS447 4.1 144.0 1.0 CB B:MET339 4.1 141.9 1.0 CD2 B:HIS447 4.3 149.1 1.0 CE1 B:HIS447 4.4 145.6 1.0 CG B:HIS447 4.6 149.7 1.0 ND1 B:HIS447 4.7 151.1 1.0 CB B:MET343 4.8 93.4 1.0 O B:GLY285 4.9 84.7 1.0 CG B:MET343 5.0 107.2 1.0

Silver binding site 6 out of 6 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 6 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Ag803 b:157.9 occ:1.00 CE B:MET341 2.6 140.7 1.0 SD B:MET341 2.8 149.7 1.0 CG B:MET341 2.8 126.9 1.0 SD B:MET343 2.8 129.0 1.0 CE B:MET448 2.9 153.1 1.0 CG B:MET448 3.1 140.2 1.0 SD B:MET448 3.2 163.3 1.0 CG B:MET343 3.6 107.2 1.0 CB B:MET341 4.3 116.0 1.0 CB B:MET448 4.5 134.5 1.0 CE B:MET343 4.5 126.5 1.0 O B:MET338 4.7 157.0 1.0 CA B:MET339 4.8 140.8 1.0 CB B:MET343 4.9 93.4 1.0 SD B:MET339 5.0 164.0 1.0

S.P.Bhamidimarri, T.R.Young, M.Shanmugam, S.Soderholm, B.Belzunces, S.Khalid, A.Basle, D.Bumann, B.Van Den Berg. Acquisition of Ionic Copper By A Bacterial Outer Membrane Protein To Be Published.