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Silver in PDB 6xtl: Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Ag:S Complex

Enzymatic activity of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Ag:S Complex

All present enzymatic activity of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Ag:S Complex:
1.8.3.7;

Protein crystallography data

The structure of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Ag:S Complex, PDB code: 6xtl was solved by F.Leisinger, F.P.Seebeck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.40 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.283, 72.009, 76.68, 90, 90, 90
R / Rfree (%) 17.7 / 22.3

Other elements in 6xtl:

The structure of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Ag:S Complex also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Chlorine (Cl) 1 atom

Silver Binding Sites:

The binding sites of Silver atom in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Ag:S Complex (pdb code 6xtl). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Ag:S Complex, PDB code: 6xtl:

Silver binding site 1 out of 1 in 6xtl

Go back to Silver Binding Sites List in 6xtl
Silver binding site 1 out of 1 in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Ag:S Complex


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Ag:S Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag401

b:13.9
occ:1.00
 SG A:CYS269 2.4 13.2 1.0
SG C:CYS7 2.4 14.3 1.0
SG A:CYS274 2.5 15.3 1.0
O A:HOH641 3.1 13.7 1.0
CB A:CYS274 3.4 13.6 1.0
CB A:CYS269 3.4 12.8 1.0
O C:HOH212 3.5 15.0 1.0
CA A:CYS269 3.7 12.0 1.0
CB C:CYS7 3.7 9.6 1.0
CB A:ARG276 3.8 11.6 1.0
CZ2 A:TRP228 3.8 8.6 1.0
O A:HOH619 4.0 16.4 1.0
NE1 A:TRP228 4.2 7.6 1.0
CE2 A:TRP228 4.3 8.9 1.0
N A:CYS269 4.4 11.6 1.0
N A:ARG276 4.5 15.6 1.0
CD A:ARG276 4.6 12.8 1.0
CA A:ARG276 4.6 12.2 1.0
CG A:ARG276 4.7 10.9 1.0
CA A:CYS274 4.8 15.7 1.0
CH2 A:TRP228 4.8 9.5 1.0
CA C:CYS7 4.9 14.0 1.0
C A:CYS269 4.9 12.4 1.0
C A:ARG276 5.0 13.3 1.0

Reference:

F.Leisinger, D.A.Miarzlou, F.P.Seebeck. Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme To Be Published.
Page generated: Sat Apr 17 13:21:34 2021

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