Silver in PDB 5f0u: Crystal Structure of Gold Binding Protein

The structure of Crystal Structure of Gold Binding Protein, PDB code: 5f0u was solved by W.Wei, F.Wang, J.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.13 / 1.68
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	37.095, 37.095, 170.032, 90.00, 90.00, 120.00
R / Rfree (%)	19.7 / 22.7

The binding sites of Silver atom in the Crystal Structure of Gold Binding Protein (pdb code 5f0u). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 5 binding sites of Silver where determined in the Crystal Structure of Gold Binding Protein, PDB code: 5f0u:
Jump to Silver binding site number: 1; 2; 3; 4; 5;

Silver binding site 1 out of 5 in the Crystal Structure of Gold Binding Protein


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Crystal Structure of Gold Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag101 b:38.9 occ:0.68 SG A:CYS14 2.4 32.8 1.0 AG A:AG105 2.6 0.5 0.9 CA A:CYS14 3.4 33.1 1.0 AG A:AG102 3.4 39.2 0.7 CB A:CYS14 3.5 30.8 1.0 N A:CYS14 3.7 34.0 1.0 CZ A:PHE60 3.9 27.3 1.0 O A:HOH243 4.0 49.2 1.0 C A:GLY13 4.3 39.5 1.0 O A:GLY13 4.3 35.9 1.0 CE1 A:PHE60 4.5 25.8 1.0 C A:CYS14 4.9 31.3 1.0 CE2 A:PHE60 5.0 23.8 1.0

Silver binding site 2 out of 5 in the Crystal Structure of Gold Binding Protein


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Crystal Structure of Gold Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag102 b:39.2 occ:0.71 SG A:CYS11 2.3 46.7 1.0 SG A:CYS14 2.4 32.8 1.0 AG A:AG103 3.0 72.2 0.8 AG A:AG105 3.0 0.5 0.9 O A:HOH243 3.1 49.2 1.0 CB A:CYS14 3.3 30.8 1.0 N A:CYS11 3.4 41.2 1.0 CB A:CYS11 3.4 41.3 1.0 N A:CYS14 3.4 34.0 1.0 AG A:AG101 3.4 38.9 0.7 OG1 A:THR10 3.5 39.1 1.0 CA A:CYS11 3.7 43.1 1.0 CA A:CYS14 3.9 33.1 1.0 O A:CYS11 4.2 38.2 1.0 C A:CYS11 4.2 44.2 1.0 C A:THR10 4.3 49.4 1.0 N A:THR10 4.4 33.8 1.0 C A:GLY13 4.4 39.5 1.0 CB A:THR10 4.7 37.6 1.0 CA A:THR10 4.7 41.1 1.0 N A:GLY13 4.7 36.4 1.0 CA A:GLY13 4.7 32.6 1.0

Silver binding site 3 out of 5 in the Crystal Structure of Gold Binding Protein


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Crystal Structure of Gold Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag103 b:72.2 occ:0.75 SG A:CYS11 2.4 46.7 1.0 O A:HOH243 2.8 49.2 1.0 AG A:AG102 3.0 39.2 0.7 CB A:CYS11 3.5 41.3 1.0 AG A:AG105 3.5 0.5 0.9 CA A:CYS11 4.8 43.1 1.0 OG1 A:THR10 4.9 39.1 1.0 N A:CYS11 5.0 41.2 1.0

Silver binding site 4 out of 5 in the Crystal Structure of Gold Binding Protein


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Crystal Structure of Gold Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag104 b:30.6 occ:0.22 N A:VAL31 2.9 28.3 1.0 O A:VAL31 3.2 38.9 1.0 O A:HOH206 3.2 21.0 1.0 NZ A:LYS19 3.4 15.3 0.3 CA A:VAL31 3.7 27.5 1.0 C A:THR30 3.8 36.2 1.0 CA A:THR30 3.8 26.7 1.0 C A:VAL31 3.9 32.6 1.0 CB A:VAL31 4.0 26.6 1.0 CE A:LYS19 4.1 17.0 0.3 CD A:LYS19 4.2 17.1 0.3 CD2 A:LEU23 4.2 26.0 1.0 O A:ALA29 4.4 30.0 1.0 CG2 A:VAL31 4.4 31.7 1.0 NH1 A:ARG32 4.5 45.1 1.0 CG A:LYS19 4.6 17.8 0.3 CD1 A:LEU23 4.6 25.1 1.0 CG2 A:THR30 4.6 40.5 1.0 CB A:THR30 4.8 33.0 1.0 N A:THR30 4.8 24.5 1.0 CG A:LEU23 4.9 23.1 1.0 C A:ALA29 5.0 26.7 1.0 O A:THR30 5.0 38.7 1.0

Silver binding site 5 out of 5 in the Crystal Structure of Gold Binding Protein


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 5 of Crystal Structure of Gold Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Ag105 b:0.5 occ:0.93 AG A:AG101 2.6 38.9 0.7 O A:HOH243 2.7 49.2 1.0 AG A:AG102 3.0 39.2 0.7 AG A:AG103 3.5 72.2 0.8 SG A:CYS14 3.7 32.8 1.0 SG A:CYS11 4.4 46.7 1.0 N A:CYS14 5.0 34.0 1.0

W.Wei, J.Zhao, F.Wang. Structure of Tetrasilver Bound to Golb at 1.70 Angstroms Resolution To Be Published.