Silver in PDB 3uge: Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A
Protein crystallography data
The structure of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A, PDB code: 3uge
was solved by
M.J.Panzner,
S.M.Billinovich,
J.A.Parker,
E.Bladholm,
S.M.Berry,
C.J.Ziegler,
T.C.Leeper,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.35 /
1.70
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.746,
97.815,
110.029,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.4 /
24.5
|
Silver Binding Sites:
The binding sites of Silver atom in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A
(pdb code 3uge). This binding sites where shown within
5.0 Angstroms radius around Silver atom.
In total 4 binding sites of Silver where determined in the
Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A, PDB code: 3uge:
Jump to Silver binding site number:
1;
2;
3;
4;
Silver binding site 1 out
of 4 in 3uge
Go back to
Silver Binding Sites List in 3uge
Silver binding site 1 out
of 4 in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A
Mono view
Stereo pair view
|
A full contact list of Silver with other atoms in the Ag binding
site number 1 of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ag129
b:12.5
occ:1.00
|
ND1
|
A:HIS117
|
2.3
|
9.0
|
1.0
|
SG
|
A:CYS112
|
2.4
|
9.8
|
1.0
|
ND1
|
A:HIS46
|
2.5
|
11.7
|
1.0
|
O
|
A:GLY45
|
2.9
|
12.0
|
1.0
|
SD
|
A:MET121
|
3.1
|
11.2
|
1.0
|
CG
|
A:HIS117
|
3.3
|
10.7
|
1.0
|
CE1
|
A:HIS117
|
3.3
|
9.6
|
1.0
|
CE1
|
A:HIS46
|
3.4
|
11.8
|
1.0
|
CB
|
A:CYS112
|
3.4
|
9.8
|
1.0
|
CG
|
A:HIS46
|
3.5
|
11.3
|
1.0
|
CB
|
A:HIS117
|
3.5
|
10.6
|
1.0
|
CA
|
A:HIS46
|
3.5
|
10.6
|
1.0
|
CB
|
A:PHE114
|
3.7
|
12.3
|
1.0
|
CB
|
A:HIS46
|
3.7
|
10.7
|
1.0
|
CE
|
A:MET121
|
3.8
|
11.1
|
1.0
|
C
|
A:GLY45
|
3.8
|
11.1
|
1.0
|
N
|
A:HIS46
|
4.1
|
10.7
|
1.0
|
NE2
|
A:HIS117
|
4.4
|
10.8
|
1.0
|
CD2
|
A:HIS117
|
4.4
|
11.3
|
1.0
|
NE2
|
A:HIS46
|
4.5
|
10.1
|
1.0
|
CG
|
A:MET121
|
4.6
|
10.4
|
1.0
|
CG
|
A:PHE114
|
4.6
|
12.7
|
1.0
|
CD2
|
A:HIS46
|
4.6
|
13.2
|
1.0
|
C
|
A:HIS46
|
4.7
|
9.9
|
1.0
|
N
|
A:ASN47
|
4.7
|
9.9
|
1.0
|
N
|
A:PHE114
|
4.8
|
11.2
|
1.0
|
CA
|
A:CYS112
|
4.8
|
9.3
|
1.0
|
CB
|
A:MET121
|
4.8
|
10.8
|
1.0
|
CA
|
A:PHE114
|
4.8
|
11.9
|
1.0
|
CA
|
A:HIS117
|
5.0
|
10.4
|
1.0
|
|
Silver binding site 2 out
of 4 in 3uge
Go back to
Silver Binding Sites List in 3uge
Silver binding site 2 out
of 4 in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A
Mono view
Stereo pair view
|
A full contact list of Silver with other atoms in the Ag binding
site number 2 of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ag129
b:16.0
occ:1.00
|
ND1
|
B:HIS117
|
2.2
|
10.0
|
1.0
|
ND1
|
B:HIS46
|
2.2
|
8.2
|
1.0
|
SG
|
B:CYS112
|
2.3
|
10.3
|
1.0
|
O
|
B:GLY45
|
2.7
|
10.6
|
1.0
|
SD
|
B:MET121
|
3.1
|
8.8
|
1.0
|
CE1
|
B:HIS46
|
3.1
|
9.9
|
1.0
|
CE1
|
B:HIS117
|
3.1
|
10.2
|
1.0
|
CG
|
B:HIS117
|
3.2
|
11.4
|
1.0
|
CG
|
B:HIS46
|
3.3
|
10.3
|
1.0
|
CB
|
B:CYS112
|
3.3
|
9.3
|
1.0
|
CA
|
B:HIS46
|
3.4
|
10.3
|
1.0
|
CB
|
B:HIS117
|
3.4
|
12.4
|
1.0
|
C
|
B:GLY45
|
3.6
|
10.9
|
1.0
|
CB
|
B:HIS46
|
3.7
|
8.8
|
1.0
|
CE
|
B:MET121
|
3.7
|
8.9
|
1.0
|
CB
|
B:PHE114
|
3.8
|
11.8
|
1.0
|
N
|
B:HIS46
|
4.0
|
9.7
|
1.0
|
NE2
|
B:HIS117
|
4.3
|
10.3
|
1.0
|
NE2
|
B:HIS46
|
4.3
|
10.0
|
1.0
|
CD2
|
B:HIS117
|
4.3
|
12.6
|
1.0
|
CD2
|
B:HIS46
|
4.4
|
10.2
|
1.0
|
CG
|
B:MET121
|
4.6
|
7.3
|
1.0
|
CG
|
B:PHE114
|
4.6
|
11.2
|
1.0
|
C
|
B:HIS46
|
4.6
|
9.8
|
1.0
|
N
|
B:ASN47
|
4.7
|
10.4
|
1.0
|
CA
|
B:CYS112
|
4.8
|
9.8
|
1.0
|
N
|
B:PHE114
|
4.8
|
10.2
|
1.0
|
CB
|
B:MET121
|
4.9
|
10.2
|
1.0
|
CA
|
B:PHE114
|
4.9
|
10.9
|
1.0
|
CA
|
B:GLY45
|
4.9
|
11.6
|
1.0
|
CA
|
B:HIS117
|
5.0
|
11.8
|
1.0
|
|
Silver binding site 3 out
of 4 in 3uge
Go back to
Silver Binding Sites List in 3uge
Silver binding site 3 out
of 4 in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A
Mono view
Stereo pair view
|
A full contact list of Silver with other atoms in the Ag binding
site number 3 of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ag129
b:15.4
occ:1.00
|
ND1
|
C:HIS117
|
2.2
|
12.2
|
1.0
|
ND1
|
C:HIS46
|
2.3
|
12.7
|
1.0
|
SG
|
C:CYS112
|
2.4
|
8.5
|
1.0
|
O
|
C:GLY45
|
2.6
|
11.0
|
1.0
|
CE1
|
C:HIS117
|
3.1
|
13.1
|
1.0
|
CG
|
C:HIS117
|
3.2
|
12.1
|
1.0
|
SD
|
C:MET121
|
3.2
|
9.3
|
1.0
|
CE1
|
C:HIS46
|
3.2
|
11.3
|
1.0
|
CG
|
C:HIS46
|
3.4
|
11.5
|
1.0
|
CB
|
C:CYS112
|
3.4
|
9.1
|
1.0
|
CA
|
C:HIS46
|
3.4
|
10.9
|
1.0
|
CB
|
C:HIS117
|
3.5
|
11.7
|
1.0
|
C
|
C:GLY45
|
3.6
|
11.5
|
1.0
|
CB
|
C:PHE114
|
3.7
|
12.3
|
1.0
|
CB
|
C:HIS46
|
3.7
|
10.5
|
1.0
|
CE
|
C:MET121
|
3.9
|
12.4
|
1.0
|
N
|
C:HIS46
|
3.9
|
10.8
|
1.0
|
NE2
|
C:HIS117
|
4.2
|
12.3
|
1.0
|
CD2
|
C:HIS117
|
4.3
|
13.7
|
1.0
|
NE2
|
C:HIS46
|
4.4
|
12.2
|
1.0
|
CD2
|
C:HIS46
|
4.5
|
15.0
|
1.0
|
CG
|
C:PHE114
|
4.5
|
12.0
|
1.0
|
CG
|
C:MET121
|
4.6
|
8.9
|
1.0
|
C
|
C:HIS46
|
4.6
|
10.1
|
1.0
|
N
|
C:PHE114
|
4.7
|
11.3
|
1.0
|
N
|
C:ASN47
|
4.7
|
9.9
|
1.0
|
CA
|
C:PHE114
|
4.8
|
12.0
|
1.0
|
CA
|
C:CYS112
|
4.8
|
8.8
|
1.0
|
CB
|
C:MET121
|
4.9
|
8.6
|
1.0
|
CA
|
C:GLY45
|
5.0
|
11.7
|
1.0
|
CA
|
C:HIS117
|
5.0
|
11.0
|
1.0
|
|
Silver binding site 4 out
of 4 in 3uge
Go back to
Silver Binding Sites List in 3uge
Silver binding site 4 out
of 4 in the Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A
Mono view
Stereo pair view
|
A full contact list of Silver with other atoms in the Ag binding
site number 4 of Silver Metallated Pseudomonas Aeruginosa Azurin at 1.70 A within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ag129
b:11.7
occ:1.00
|
ND1
|
D:HIS46
|
2.3
|
8.6
|
1.0
|
SG
|
D:CYS112
|
2.4
|
8.8
|
1.0
|
ND1
|
D:HIS117
|
2.4
|
8.9
|
1.0
|
O
|
D:GLY45
|
2.9
|
12.1
|
1.0
|
SD
|
D:MET121
|
3.1
|
11.2
|
1.0
|
CE1
|
D:HIS46
|
3.3
|
10.3
|
1.0
|
CG
|
D:HIS117
|
3.3
|
10.2
|
1.0
|
CG
|
D:HIS46
|
3.3
|
11.0
|
1.0
|
CB
|
D:CYS112
|
3.4
|
10.1
|
1.0
|
CB
|
D:HIS117
|
3.4
|
10.5
|
1.0
|
CE1
|
D:HIS117
|
3.4
|
7.4
|
1.0
|
CA
|
D:HIS46
|
3.5
|
11.1
|
1.0
|
CB
|
D:HIS46
|
3.7
|
11.1
|
1.0
|
CB
|
D:PHE114
|
3.8
|
9.8
|
1.0
|
CE
|
D:MET121
|
3.9
|
8.2
|
1.0
|
C
|
D:GLY45
|
3.9
|
11.2
|
1.0
|
N
|
D:HIS46
|
4.1
|
10.4
|
1.0
|
NE2
|
D:HIS46
|
4.4
|
9.8
|
1.0
|
CD2
|
D:HIS117
|
4.5
|
11.2
|
1.0
|
CD2
|
D:HIS46
|
4.5
|
13.7
|
1.0
|
NE2
|
D:HIS117
|
4.5
|
10.7
|
1.0
|
CG
|
D:MET121
|
4.5
|
11.8
|
1.0
|
CG
|
D:PHE114
|
4.6
|
10.1
|
1.0
|
C
|
D:HIS46
|
4.7
|
10.2
|
1.0
|
N
|
D:ASN47
|
4.7
|
9.3
|
1.0
|
N
|
D:PHE114
|
4.8
|
8.9
|
1.0
|
CA
|
D:CYS112
|
4.8
|
9.1
|
1.0
|
CB
|
D:MET121
|
4.9
|
10.7
|
1.0
|
CA
|
D:PHE114
|
4.9
|
9.7
|
1.0
|
CA
|
D:HIS117
|
5.0
|
10.7
|
1.0
|
|
Reference:
M.J.Panzner,
S.M.Billinovich,
J.A.Parker,
E.Bladholm,
S.M.Berry,
C.J.Ziegler,
T.C.Leeper.
Silver Metallation of Pseudomonas Aeruginosa Azurin To Be Published.
Page generated: Wed Jul 10 08:22:42 2024
|