Atomistry » Silver » PDB 1aoo-6ka0 » 3ru5
Atomistry »
  Silver »
    PDB 1aoo-6ka0 »
      3ru5 »

Silver in PDB 3ru5: Silver Metallated Hen Egg White Lysozyme at 1.35 A

Enzymatic activity of Silver Metallated Hen Egg White Lysozyme at 1.35 A

All present enzymatic activity of Silver Metallated Hen Egg White Lysozyme at 1.35 A:
3.2.1.17;

Protein crystallography data

The structure of Silver Metallated Hen Egg White Lysozyme at 1.35 A, PDB code: 3ru5 was solved by T.C.Leeper, M.J.Panzner, S.M.Bilinovich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.55 / 1.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.798, 77.798, 37.629, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 21.5

Other elements in 3ru5:

The structure of Silver Metallated Hen Egg White Lysozyme at 1.35 A also contains other interesting chemical elements:

Sodium (Na) 5 atoms

Silver Binding Sites:

The binding sites of Silver atom in the Silver Metallated Hen Egg White Lysozyme at 1.35 A (pdb code 3ru5). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total only one binding site of Silver was determined in the Silver Metallated Hen Egg White Lysozyme at 1.35 A, PDB code: 3ru5:

Silver binding site 1 out of 1 in 3ru5

Go back to Silver Binding Sites List in 3ru5
Silver binding site 1 out of 1 in the Silver Metallated Hen Egg White Lysozyme at 1.35 A


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Silver Metallated Hen Egg White Lysozyme at 1.35 A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag300

b:29.9
occ:1.00
O3 A:NO3301 2.0 25.9 1.0
NE2 A:HIS15 2.1 19.0 1.0
OD2 A:ASP87 2.3 23.1 1.0
NH2 A:ARG14 2.5 23.4 1.0
CE1 A:HIS15 3.0 21.3 1.0
N A:NO3301 3.1 26.4 1.0
CD2 A:HIS15 3.1 18.5 1.0
CG A:ASP87 3.1 20.3 1.0
OD1 A:ASP87 3.4 20.6 1.0
CZ A:ARG14 3.4 20.1 1.0
OG1 A:THR89 3.4 17.1 1.0
O2 A:NO3301 3.6 26.2 1.0
N A:THR89 4.1 14.7 1.0
N A:ILE88 4.1 15.7 1.0
NE A:ARG14 4.1 21.4 1.0
NH1 A:ARG14 4.1 22.6 1.0
ND1 A:HIS15 4.1 21.0 1.0
CG1 A:ILE88 4.1 14.5 1.0
O1 A:NO3301 4.2 27.1 1.0
CG A:HIS15 4.2 18.4 1.0
CB A:ASP87 4.5 18.8 1.0
CA A:THR89 4.6 14.9 1.0
CB A:THR89 4.6 15.2 1.0
C A:ILE88 4.7 14.4 1.0
CA A:ILE88 4.8 14.7 1.0
C A:ASP87 4.8 16.6 1.0
O A:HOH222 4.8 31.5 1.0
CA A:ASP87 4.8 17.9 1.0

Reference:

M.J.Panzner, S.M.Bilinovich, W.J.Youngs, T.C.Leeper. Silver Metallation of Hen Egg White Lysozyme: X-Ray Crystal Structure and uc(Nmr) Studies. Chem.Commun.(Camb.) V. 47 12479 2011.
ISSN: ISSN 1359-7345
PubMed: 22042312
DOI: 10.1039/C1CC15908A
Page generated: Wed Jul 10 08:22:01 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy