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Silver in PDB 2ke8: uc(Nmr) Solution Structure of Metal-Modified Dna

Silver Binding Sites:

The binding sites of Silver atom in the uc(Nmr) Solution Structure of Metal-Modified Dna (pdb code 2ke8). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 3 binding sites of Silver where determined in the uc(Nmr) Solution Structure of Metal-Modified Dna, PDB code: 2ke8:
Jump to Silver binding site number: 1; 2; 3;

Silver binding site 1 out of 3 in 2ke8

Go back to Silver Binding Sites List in 2ke8
Silver binding site 1 out of 3 in the uc(Nmr) Solution Structure of Metal-Modified Dna


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of uc(Nmr) Solution Structure of Metal-Modified Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag35

b:0.0
occ:1.00
N3 B:D3327 2.1 0.0 1.0
N3 A:D338 2.1 0.0 1.0
C2 A:D338 3.1 0.0 1.0
C2 B:D3327 3.1 0.0 1.0
C4 B:D3327 3.1 0.0 1.0
C4 A:D338 3.2 0.0 1.0
H22 A:D338 3.3 0.0 1.0
H44 B:D3327 3.3 0.0 1.0
H22 B:D3327 3.3 0.0 1.0
H44 A:D338 3.4 0.0 1.0
AG A:AG36 3.9 0.0 1.0
N3 A:D339 4.1 0.0 1.0
H2 B:DA28 4.3 0.0 1.0
N1 A:D338 4.3 0.0 1.0
N1 B:D3327 4.3 0.0 1.0
C5 B:D3327 4.3 0.0 1.0
C5 A:D338 4.3 0.0 1.0
C2 B:DA28 4.5 0.0 1.0
C4 A:D339 4.6 0.0 1.0
H44 A:D339 4.6 0.0 1.0
N1 B:DA28 4.7 0.0 1.0
N3 B:D3326 4.8 0.0 1.0
C2 A:D339 4.8 0.0 1.0
H3 A:DT7 4.9 0.0 1.0

Silver binding site 2 out of 3 in 2ke8

Go back to Silver Binding Sites List in 2ke8
Silver binding site 2 out of 3 in the uc(Nmr) Solution Structure of Metal-Modified Dna


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of uc(Nmr) Solution Structure of Metal-Modified Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag36

b:0.0
occ:1.00
N3 B:D3326 2.1 0.0 1.0
N3 A:D339 2.1 0.0 1.0
C2 A:D339 3.1 0.0 1.0
C2 B:D3326 3.1 0.0 1.0
C4 A:D339 3.1 0.0 1.0
C4 B:D3326 3.1 0.0 1.0
H44 A:D339 3.3 0.0 1.0
H22 A:D339 3.3 0.0 1.0
H44 B:D3326 3.3 0.0 1.0
H22 B:D3326 3.3 0.0 1.0
AG A:AG35 3.9 0.0 1.0
AG A:AG37 4.0 0.0 1.0
N3 B:D3327 4.2 0.0 1.0
N3 A:D3310 4.2 0.0 1.0
N1 A:D339 4.3 0.0 1.0
N1 B:D3326 4.3 0.0 1.0
C5 A:D339 4.3 0.0 1.0
C5 B:D3326 4.3 0.0 1.0
H22 B:D3327 4.5 0.0 1.0
H22 A:D3310 4.6 0.0 1.0
C2 B:D3327 4.6 0.0 1.0
C2 A:D3310 4.6 0.0 1.0
N3 A:D338 4.7 0.0 1.0
N3 B:D3325 4.8 0.0 1.0
C4 B:D3327 5.0 0.0 1.0
C4 A:D3310 5.0 0.0 1.0

Silver binding site 3 out of 3 in 2ke8

Go back to Silver Binding Sites List in 2ke8
Silver binding site 3 out of 3 in the uc(Nmr) Solution Structure of Metal-Modified Dna


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of uc(Nmr) Solution Structure of Metal-Modified Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag37

b:0.0
occ:1.00
N3 B:D3325 2.1 0.0 1.0
N3 A:D3310 2.1 0.0 1.0
C2 B:D3325 3.1 0.0 1.0
C2 A:D3310 3.1 0.0 1.0
C4 A:D3310 3.2 0.0 1.0
C4 B:D3325 3.2 0.0 1.0
H22 B:D3325 3.3 0.0 1.0
H44 A:D3310 3.3 0.0 1.0
H22 A:D3310 3.3 0.0 1.0
H44 B:D3325 3.4 0.0 1.0
AG A:AG36 4.0 0.0 1.0
N3 B:D3326 4.2 0.0 1.0
H2 A:DA11 4.2 0.0 1.0
N1 B:D3325 4.3 0.0 1.0
N1 A:D3310 4.3 0.0 1.0
C5 A:D3310 4.3 0.0 1.0
C5 B:D3325 4.3 0.0 1.0
C2 A:DA11 4.5 0.0 1.0
C4 B:D3326 4.6 0.0 1.0
H44 B:D3326 4.6 0.0 1.0
N1 A:DA11 4.7 0.0 1.0
C2 B:D3326 4.8 0.0 1.0
N3 A:D339 4.8 0.0 1.0
H3 B:DT24 4.9 0.0 1.0

Reference:

S.Johannsen, N.Megger, D.Bohme, R.K.Sigel, J.Muller. Solution Structure of A Dna Double Helix with Consecutive Metal-Mediated Base Pairs. Nat.Chem. V. 2 229 2010.
ISSN: ISSN 1755-4330
PubMed: 21124482
DOI: 10.1038/NCHEM.512
Page generated: Tue Oct 27 16:40:11 2020
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