Chemical elements
  Silver
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    PDB 1aoo-3kso
      1aoo
      1aqq
      1q06
      2aw0
      2g7n
      2ke8
      2qcp
      2vb3
      2x17
      2x50
      3h94
      3kso

Silver in the structure of Structure Of the Light Chain of Botulinum Neurotoxin Serotype A Bound to Small Molecule Inhibitors (pdb 2g7n)






The binding sites of Silver atom in the structure of Structure Of the Light Chain of Botulinum Neurotoxin Serotype A Bound to Small Molecule Inhibitors (pdb code 2g7n). This binding sites where shown with 5.0 Angstroms radius around Silver atom.
The 2g7n structure was solved by Z.FU, M.R.BALDWIN, G.E.BOLDT, K.D.JANDA, J.T.BARBIERI, J.-J.P.KIM, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)25.3-1.9
Space groupP1211
a (A)50.910
b (A)66.710
c (A)64.390
alpha (°)90.00
beta (°)98.48
gamma (°)90.00
Rfactor (%)22.3
Rfree (%)24.8


Silver Binding Sites:

Silver binding site 1 out of 4 in 2g7n


Silver binding site 1 out of 4 in 2g7n
Click to enlarge
stereopicture of Silver binding site 1 out of 4 in 2g7n
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Silver in the PDB 2g7n. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Silver atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Val128, A: Cys133, A: Ser145, A: Glu146, A: Glu147, A: Ag454, A: Hoh570, A: Hoh584,

conact list:


AtomAtomDistance (A)
AgCB A:Val1284.88
AgCG2 A:Val1284.35
AgCG1 A:Val1284.36
AgCB A:Cys1333.27
AgSG A:Cys1332.44
AgCA A:Cys1334.64
AgO A:Ser1454.50
AgCB A:Ser1453.92
AgOG A:Ser1452.77
AgC A:Ser1454.26
AgCA A:Ser1454.67
AgO A:Glu1464.61
AgN A:Glu1464.26
AgC A:Glu1464.24
AgCA A:Glu1464.57
AgN A:Glu1474.15
AgCB A:Glu1474.75
AgCD A:Glu1474.84
AgCG A:Glu1473.79
AgCA A:Glu1474.56
AgAG A:Ag4542.86
AgO A:Hoh5704.60
AgO A:Hoh5843.11

interactive model:


Silver binding site 2 out of 4 in 2g7n


Silver binding site 2 out of 4 in 2g7n
Click to enlarge
stereopicture of Silver binding site 2 out of 4 in 2g7n
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Silver in the PDB 2g7n. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Silver atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu163, A: Cys164, A: Ile185, A: Glu223, A: His226, A: Ala227, A: Ag453,

conact list:


AtomAtomDistance (A)
AgO A:Glu1633.88
AgN A:Glu1634.49
AgC A:Glu1633.25
AgCA A:Glu1633.77
AgN A:Cys1642.82
AgCB A:Cys1643.14
AgSG A:Cys1642.60
AgC A:Cys1644.73
AgCA A:Cys1643.25
AgCB A:Ile1854.59
AgCD1 A:Ile1854.58
AgCG2 A:Ile1853.90
AgCG1 A:Ile1854.33
AgCA A:Ile1854.90
AgO A:Glu2233.73
AgOE1 A:Glu2232.21
AgCB A:Glu2233.57
AgOE2 A:Glu2234.38
AgCD A:Glu2233.33
AgC A:Glu2234.19
AgCG A:Glu2233.86
AgCA A:Glu2233.88
AgCB A:His2264.44
AgND1 A:His2264.66
AgCG A:His2264.94
AgN A:Ala2274.94
AgAG A:Ag4532.76

interactive model:


Silver binding site 3 out of 4 in 2g7n


Silver binding site 3 out of 4 in 2g7n
Click to enlarge
stereopicture of Silver binding site 3 out of 4 in 2g7n
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Silver in the PDB 2g7n. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Silver atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Glu163, A: Cys164, A: Glu223, A: His226, A: Ala227, A: Arg230, A: Ag452, A: Hoh611,

conact list:


AtomAtomDistance (A)
AgC A:Glu1634.91
AgN A:Cys1643.81
AgCB A:Cys1642.67
AgSG A:Cys1642.45
AgC A:Cys1644.90
AgCA A:Cys1643.81
AgO A:Glu2234.15
AgOE1 A:Glu2234.18
AgO A:His2263.86
AgNE2 A:His2264.53
AgN A:His2264.95
AgCB A:His2263.01
AgND1 A:His2262.40
AgCD2 A:His2264.32
AgC A:His2263.55
AgCE1 A:His2263.56
AgCG A:His2263.06
AgCA A:His2263.89
AgN A:Ala2273.68
AgCB A:Ala2274.79
AgCA A:Ala2274.18
AgCD A:Arg2303.66
AgCG A:Arg2304.87
AgNE A:Arg2304.39
AgAG A:Ag4522.76
AgO A:Hoh6114.50

interactive model:


Silver binding site 4 out of 4 in 2g7n


Silver binding site 4 out of 4 in 2g7n
Click to enlarge
stereopicture of Silver binding site 4 out of 4 in 2g7n
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Silver in the PDB 2g7n. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Silver atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Val128, A: Ile129, A: Asp130, A: Cys133, A: Ser145, A: Ag451, A: Hoh584,

conact list:


AtomAtomDistance (A)
AgCB A:Val1284.56
AgCG2 A:Val1283.99
AgCG1 A:Val1283.81
AgO A:Ile1293.96
AgC A:Ile1294.26
AgO A:Asp1304.50
AgN A:Asp1304.17
AgCB A:Asp1304.38
AgC A:Asp1304.46
AgCA A:Asp1303.66
AgN A:Cys1334.71
AgCB A:Cys1333.29
AgSG A:Cys1332.54
AgCA A:Cys1334.61
AgOG A:Ser1453.80
AgAG A:Ag4512.86
AgO A:Hoh5844.92

interactive model:




© Copyright 2008-2012 by atomistry.com