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Silver in PDB 1aoo: Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure

Silver Binding Sites:

The binding sites of Silver atom in the Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure (pdb code 1aoo). This binding sites where shown within 5.0 Angstroms radius around Silver atom.
In total 7 binding sites of Silver where determined in the Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure, PDB code: 1aoo:
Jump to Silver binding site number: 1; 2; 3; 4; 5; 6; 7;

Silver binding site 1 out of 7 in 1aoo

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Silver binding site 1 out of 7 in the Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 1 of Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag41

b:0.4
occ:1.00
AG A:AG47 2.4 0.8 1.0
SG A:CYS24 2.5 0.5 1.0
SG A:CYS9 2.5 0.7 1.0
SG A:CYS7 2.6 0.4 1.0
AG A:AG44 2.8 0.4 1.0
HB2 A:CYS26 3.3 0.3 1.0
HB2 A:CYS9 3.3 0.6 1.0
HA A:CYS7 3.3 0.4 1.0
H A:CYS9 3.4 0.5 1.0
CB A:CYS9 3.5 0.6 1.0
CB A:CYS24 3.6 0.5 1.0
H A:GLN8 3.6 0.4 1.0
AG A:AG43 3.6 0.4 1.0
HB3 A:CYS14 3.7 1.1 1.0
HB2 A:CYS24 3.7 0.8 1.0
SG A:CYS26 3.7 0.4 1.0
HB3 A:CYS24 3.8 0.8 1.0
CB A:CYS26 3.9 0.3 1.0
CB A:CYS7 3.9 0.4 1.0
N A:CYS9 3.9 0.5 1.0
CA A:CYS7 4.0 0.3 1.0
HB3 A:CYS26 4.1 0.3 1.0
N A:GLN8 4.1 0.4 1.0
SG A:CYS14 4.2 1.1 1.0
SG A:CYS38 4.2 0.5 1.0
C A:CYS7 4.3 0.4 1.0
HB2 A:CYS7 4.3 0.5 1.0
CA A:CYS9 4.3 0.6 1.0
CB A:CYS14 4.3 0.9 1.0
HB3 A:CYS9 4.4 0.8 1.0
AG A:AG46 4.4 0.5 1.0
HE1 A:HIS5 4.4 0.4 1.0
HA A:GLN21 4.5 0.6 1.0
HA A:CYS9 4.6 0.7 1.0
H A:CYS26 4.6 0.3 1.0
O A:CYS20 4.7 0.5 1.0
HB2 A:CYS14 4.7 0.8 1.0
HB3 A:CYS7 4.8 0.5 1.0
C A:GLN8 4.8 0.6 1.0
AG A:AG42 4.8 0.8 1.0
NE2 A:HIS5 4.9 0.4 1.0
HB2 A:CYS38 4.9 1.0 1.0
CE1 A:HIS5 4.9 0.3 1.0
CA A:CYS24 5.0 0.4 1.0

Silver binding site 2 out of 7 in 1aoo

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Silver binding site 2 out of 7 in the Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 2 of Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag42

b:0.8
occ:1.00
HB3 A:CYS9 2.2 0.8 1.0
SG A:CYS14 2.5 1.1 1.0
SG A:CYS36 2.5 0.8 1.0
SG A:CYS11 2.7 0.7 1.0
SG A:CYS9 2.8 0.7 1.0
CB A:CYS9 2.9 0.6 1.0
HB2 A:CYS11 2.9 0.7 1.0
AG A:AG45 3.1 0.5 1.0
CB A:CYS11 3.3 0.7 1.0
HB2 A:CYS14 3.4 0.8 1.0
HB2 A:CYS9 3.5 0.6 1.0
CB A:CYS14 3.6 0.9 1.0
AG A:AG46 3.6 0.5 1.0
AG A:AG47 3.6 0.8 1.0
H A:CYS14 3.8 0.8 1.0
HB3 A:CYS11 3.8 0.8 1.0
H A:CYS11 3.8 0.7 1.0
CA A:CYS9 4.1 0.6 1.0
HA A:CYS9 4.1 0.7 1.0
CB A:CYS36 4.1 0.4 1.0
HB3 A:CYS14 4.2 1.1 1.0
HB3 A:SER13 4.2 1.5 1.0
HB3 A:CYS38 4.3 0.9 1.0
HB2 A:CYS36 4.4 0.7 1.0
N A:CYS14 4.4 0.7 1.0
HB3 A:CYS36 4.5 0.6 1.0
N A:CYS11 4.6 0.8 1.0
CA A:CYS11 4.6 0.8 1.0
HG A:SER13 4.6 1.7 1.0
C A:CYS9 4.7 0.7 1.0
CA A:CYS14 4.7 0.8 1.0
AG A:AG41 4.8 0.4 1.0
H A:SER13 4.9 0.8 1.0
SG A:CYS30 4.9 0.5 1.0

Silver binding site 3 out of 7 in 1aoo

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Silver binding site 3 out of 7 in the Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 3 of Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag43

b:0.4
occ:1.00
HA A:GLN21 2.3 0.6 1.0
O A:CYS20 2.4 0.5 1.0
SG A:CYS20 2.5 0.5 1.0
SG A:CYS7 2.5 0.4 1.0
HG2 A:GLN21 2.7 1.9 1.0
C A:CYS20 2.7 0.4 1.0
HB3 A:CYS14 2.7 1.1 1.0
N A:GLN21 3.0 0.4 1.0
CA A:GLN21 3.0 0.5 1.0
AG A:AG47 3.0 0.8 1.0
HA A:CYS14 3.1 0.8 1.0
HG3 A:GLN21 3.3 1.9 1.0
CG A:GLN21 3.4 1.4 1.0
CB A:CYS14 3.4 0.9 1.0
CB A:CYS20 3.6 0.6 1.0
SG A:CYS14 3.6 1.1 1.0
AG A:AG41 3.6 0.4 1.0
HB2 A:CYS7 3.6 0.5 1.0
H A:GLN21 3.6 0.4 1.0
CA A:CYS20 3.7 0.5 1.0
CA A:CYS14 3.7 0.8 1.0
CB A:CYS7 3.7 0.4 1.0
HB2 A:CYS20 3.7 0.6 1.0
CB A:GLN21 3.8 0.6 1.0
H A:CYS20 4.1 0.5 1.0
HB3 A:CYS24 4.2 0.8 1.0
HB3 A:CYS7 4.2 0.5 1.0
C A:GLN21 4.3 0.7 1.0
O A:ASN17 4.3 0.7 1.0
H A:LYS22 4.3 0.7 1.0
HB2 A:CYS9 4.3 0.6 1.0
HB2 A:CYS14 4.4 0.8 1.0
N A:CYS20 4.4 0.5 1.0
HB2 A:GLN21 4.4 1.1 1.0
HB3 A:CYS20 4.5 0.7 1.0
SG A:CYS38 4.5 0.5 1.0
HA A:CYS20 4.5 0.6 1.0
HB3 A:GLN21 4.6 1.2 1.0
C A:CYS14 4.6 0.8 1.0
O A:CYS14 4.7 0.8 1.0
N A:LYS22 4.7 0.7 1.0
CD A:GLN21 4.7 1.6 1.0
SG A:CYS24 4.8 0.5 1.0
HA A:CYS7 4.9 0.4 1.0
N A:CYS14 4.9 0.7 1.0
CB A:CYS24 4.9 0.5 1.0
CA A:CYS7 4.9 0.3 1.0

Silver binding site 4 out of 7 in 1aoo

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Silver binding site 4 out of 7 in the Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 4 of Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag44

b:0.4
occ:1.00
HB2 A:CYS24 1.9 0.8 1.0
HB2 A:CYS38 2.3 1.0 1.0
SG A:CYS26 2.5 0.4 1.0
SG A:CYS38 2.5 0.5 1.0
CB A:CYS24 2.6 0.5 1.0
SG A:CYS24 2.7 0.5 1.0
AG A:AG47 2.8 0.8 1.0
AG A:AG41 2.8 0.4 1.0
CB A:CYS38 2.8 0.7 1.0
HB3 A:CYS24 3.2 0.8 1.0
HB3 A:CYS38 3.2 0.9 1.0
HB2 A:CYS26 3.2 0.3 1.0
H A:CYS26 3.4 0.3 1.0
CB A:CYS26 3.5 0.3 1.0
AG A:AG46 3.6 0.5 1.0
SG A:CYS9 3.8 0.7 1.0
CA A:CYS24 3.8 0.4 1.0
HA A:CYS24 4.1 0.4 1.0
N A:CYS26 4.1 0.3 1.0
O A:ASN40 4.2 3.0 1.0
CA A:CYS38 4.2 0.9 1.0
C A:CYS24 4.2 0.4 1.0
HB3 A:CYS26 4.3 0.3 1.0
HA A:CYS38 4.3 1.2 1.0
CA A:CYS26 4.4 0.3 1.0
N A:SER25 4.6 0.4 1.0
O A:CYS24 4.7 0.4 1.0
H A:SER25 4.7 0.5 1.0
HA A:CYS26 4.7 0.3 1.0
H A:ASN40 4.8 1.1 1.0
N A:CYS24 4.9 0.3 1.0
H A:CYS38 4.9 0.8 1.0
N A:CYS38 5.0 1.1 1.0
H A:CYS24 5.0 0.4 1.0

Silver binding site 5 out of 7 in 1aoo

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Silver binding site 5 out of 7 in the Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 5 of Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag45

b:0.5
occ:1.00
SG A:CYS30 2.5 0.5 1.0
SG A:CYS11 2.5 0.7 1.0
HA A:CYS9 3.0 0.7 1.0
AG A:AG42 3.1 0.8 1.0
AG A:AG46 3.2 0.5 1.0
SG A:CYS36 3.2 0.8 1.0
HB3 A:CYS30 3.3 0.4 1.0
H A:GLN10 3.4 0.8 1.0
HB3 A:CYS9 3.4 0.8 1.0
HB2 A:CYS36 3.4 0.7 1.0
SG A:CYS9 3.5 0.7 1.0
CB A:CYS30 3.6 0.4 1.0
O A:SER32 3.7 2.1 1.0
CB A:CYS9 3.7 0.6 1.0
CA A:CYS9 3.7 0.6 1.0
H A:CYS11 3.9 0.7 1.0
CB A:CYS36 3.9 0.4 1.0
O A:CYS30 4.0 0.4 1.0
N A:GLN10 4.0 0.7 1.0
C A:CYS30 4.1 0.4 1.0
H A:SER32 4.2 1.6 1.0
CB A:CYS11 4.3 0.7 1.0
C A:CYS9 4.3 0.7 1.0
CA A:CYS30 4.4 0.4 1.0
HB2 A:CYS30 4.4 0.4 1.0
N A:CYS11 4.5 0.8 1.0
N A:ASN31 4.5 0.6 1.0
HA A:ASN31 4.6 0.7 1.0
HB2 A:CYS11 4.6 0.7 1.0
HB3 A:CYS36 4.6 0.6 1.0
HA A:CYS36 4.7 1.2 1.0
N A:SER32 4.7 1.2 1.0
HA A:CYS30 4.7 0.4 1.0
HB2 A:CYS9 4.8 0.6 1.0
HB2 A:GLN10 4.9 1.0 1.0
HB3 A:CYS11 4.9 0.8 1.0
C A:SER32 4.9 1.5 1.0
CA A:CYS36 4.9 0.8 1.0
H A:ASN31 4.9 0.8 1.0
CA A:ASN31 5.0 0.7 1.0

Silver binding site 6 out of 7 in 1aoo

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Silver binding site 6 out of 7 in the Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 6 of Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag46

b:0.5
occ:1.00
SG A:CYS26 2.5 0.4 1.0
SG A:CYS36 2.5 0.8 1.0
SG A:CYS30 2.5 0.5 1.0
SG A:CYS9 2.8 0.7 1.0
HA A:CYS36 2.8 1.2 1.0
AG A:AG45 3.2 0.5 1.0
HB3 A:CYS38 3.5 0.9 1.0
CB A:CYS36 3.5 0.4 1.0
CB A:CYS30 3.6 0.4 1.0
AG A:AG42 3.6 0.8 1.0
AG A:AG44 3.6 0.4 1.0
CA A:CYS36 3.6 0.8 1.0
HB2 A:CYS30 3.6 0.4 1.0
HB2 A:CYS36 3.7 0.7 1.0
HB3 A:CYS30 3.8 0.4 1.0
HB2 A:CYS38 3.8 1.0 1.0
O A:LYS35 3.9 2.2 1.0
CB A:CYS26 4.0 0.3 1.0
HB3 A:CYS26 4.0 0.3 1.0
CB A:CYS38 4.1 0.7 1.0
AG A:AG47 4.2 0.8 1.0
HA A:CYS9 4.3 0.7 1.0
CB A:CYS9 4.3 0.6 1.0
AG A:AG41 4.4 0.4 1.0
HB3 A:CYS36 4.5 0.6 1.0
HB3 A:CYS9 4.5 0.8 1.0
H A:CYS38 4.5 0.8 1.0
HB2 A:CYS26 4.6 0.3 1.0
C A:CYS36 4.6 1.1 1.0
N A:CYS36 4.6 1.1 1.0
C A:LYS35 4.7 1.7 1.0
HA A:CYS26 4.8 0.3 1.0
HD2 A:PRO37 4.8 2.3 1.0
CA A:CYS9 4.9 0.6 1.0
SG A:CYS38 5.0 0.5 1.0
CA A:CYS30 5.0 0.4 1.0

Silver binding site 7 out of 7 in 1aoo

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Silver binding site 7 out of 7 in the Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Silver with other atoms in the Ag binding site number 7 of Ag-Substituted Metallothionein From Saccharomyces Cerevisiae, uc(Nmr), Minimized Average Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ag47

b:0.8
occ:1.00
AG A:AG41 2.4 0.4 1.0
SG A:CYS14 2.5 1.1 1.0
SG A:CYS38 2.5 0.5 1.0
AG A:AG44 2.8 0.4 1.0
SG A:CYS9 2.9 0.7 1.0
AG A:AG43 3.0 0.4 1.0
HB3 A:CYS14 3.3 1.1 1.0
HB3 A:CYS38 3.4 0.9 1.0
CB A:CYS38 3.5 0.7 1.0
CB A:CYS14 3.6 0.9 1.0
AG A:AG42 3.6 0.8 1.0
SG A:CYS7 3.7 0.4 1.0
HB2 A:CYS9 3.7 0.6 1.0
HB2 A:CYS24 3.8 0.8 1.0
CB A:CYS9 3.9 0.6 1.0
HB2 A:CYS38 3.9 1.0 1.0
HB3 A:CYS24 4.0 0.8 1.0
SG A:CYS24 4.1 0.5 1.0
SG A:CYS20 4.1 0.5 1.0
HB3 A:CYS9 4.2 0.8 1.0
CB A:CYS24 4.2 0.5 1.0
HB2 A:CYS14 4.2 0.8 1.0
AG A:AG46 4.2 0.5 1.0
O A:CYS20 4.4 0.5 1.0
HA A:CYS14 4.5 0.8 1.0
SG A:CYS36 4.5 0.8 1.0
SG A:CYS26 4.5 0.4 1.0
CA A:CYS14 4.6 0.8 1.0
HB2 A:CYS20 4.6 0.6 1.0
CA A:CYS38 4.9 0.9 1.0
O A:ASN40 4.9 3.0 1.0
HA A:GLN21 4.9 0.6 1.0
H A:CYS9 5.0 0.5 1.0

Reference:

C.W.Peterson, S.S.Narula, I.M.Armitage. 3D Solution Structure of Copper and Silver-Substituted Yeast Metallothioneins. Febs Lett. V. 379 85 1996.
ISSN: ISSN 0014-5793
PubMed: 8566237
DOI: 10.1016/0014-5793(95)01492-6
Page generated: Tue Oct 27 16:40:08 2020
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